PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015323m | ||||||||
Common Name | EUTSA_v10015323mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NF-YC | ||||||||
Protein Properties | Length: 204aa MW: 22637.6 Da PI: 4.7223 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 170.5 | 2e-53 | 38 | 136 | 2 | 100 |
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 lk+fw +q+e+++dfk h+lPlarikki+k+d dv+misaeaP++++kace+fi++lt+rswlhaeenkrrtl+k di+aav+r + +dfl+d+ Thhalv10015323m 38 LKNFWLQQMESVEDFKIHQLPLARIKKIMKSDSDVRMISAEAPIVFAKACEMFIVDLTMRSWLHAEENKRRTLQKPDISAAVARNFAYDFLIDV 131 9********************************************************************************************* PP NF-YC 96 vprde 100 vprde Thhalv10015323m 132 VPRDE 136 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.7E-29 | 14 | 128 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-34 | 47 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-20 | 56 | 119 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MENNNHQPPP QPSQPPMYSQ PPHTAAFNPV LQQQNQALKN FWLQQMESVE DFKIHQLPLA 60 RIKKIMKSDS DVRMISAEAP IVFAKACEMF IVDLTMRSWL HAEENKRRTL QKPDISAAVA 120 RNFAYDFLID VVPRDESLAA VDPDFVAVPH PDGGGVPYYY PPVIDGSGMY APYPGQSWPV 180 SWPAVSGDGE EETVQCGENS GGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-44 | 43 | 134 | 4 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015323m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402087.1 | 1e-151 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9FGP7 | 2e-78 | NFYC6_ARATH; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | V4KZY0 | 1e-149 | V4KZY0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402087.1 | 1e-150 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50480.1 | 8e-65 | nuclear factor Y, subunit C6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015323m |
Entrez Gene | 18018384 |
Publications ? help Back to Top | |||
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