PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015077m
Common NameEUTSA_v10015077mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 109aa    MW: 12412 Da    PI: 6.5778
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015077mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind45.81.6e-14111031103
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      aF ++ly+ +++++++++ sws++g+sf+v+++ efa++vL       ++ S +  +  Y+F+kv  e+         +e+++++F +g+ el+
  Thhalv10015077m  11 AFFTRLYNTVDNPATDSIASWSQSGKSFIVWNPVEFARRVLLCSLLSPSIRSIL-CIYGYEFRKVGYES---------NEYANDNFVRGQPELM 94 
                      5999*****************************************999999985.35555666666655.........78************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++i r+ s+
  Thhalv10015077m  95 KNIPRQDSS 103
                      *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-168100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-178100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-151199IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-121299IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MLGIERNSDE AFFTRLYNTV DNPATDSIAS WSQSGKSFIV WNPVEFARRV LLCSLLSPSI  60
RSILCIYGYE FRKVGYESNE YANDNFVRGQ PELMKNIPRQ DSSSQSRM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015077m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599108.12e-22heat stress transcription factor A-4a isoform X1
RefseqXP_021599109.12e-22heat stress transcription factor A-4a isoform X1
TrEMBLV4NBE52e-74V4NBE5_EUTSA; Uncharacterized protein
STRINGXP_006401778.14e-75(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1954256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.13e-21HSF family protein