PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015013m
Common NameEUTSA_v10015013mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 130aa    MW: 15244.6 Da    PI: 9.0239
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015013mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind27.49e-091349339
                     HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH CS
     HSF_DNA-bind  3 lkklyeiledeelkeliswsengnsfvvldeeefakk 39
                      ++ly+++++++++++ sws++g+sf+v+++ efa+k
  Thhalv10015013m 13 FTRLYNMVDNPATDSIASWSQSGKSFIVWNPVEFARK 49
                     579*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-7880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.7E-91049IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-121477IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-61450IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MLGIERNSDE ALFTRLYNMV DNPATDSIAS WSQSGKSFIV WNPVEFARKK FRMVGFETNE  60
YANDNFVRGQ PQLMKNIPKL DMFITKEDAM EYNNILRKEK EELLAALRKQ ELQIKELKYH  120
LQHVRVCKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015013m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518819.17e-20PREDICTED: heat stress transcription factor A-4a
SwissprotO494035e-16HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLV4KZ171e-91V4KZ17_EUTSA; Uncharacterized protein
STRINGXP_006401777.12e-92(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1954256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.14e-18HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]