PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014613m
Common NameEUTSA_v10014613mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 223aa    MW: 25425.2 Da    PI: 6.7496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014613mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+ + +a  +++ g   +W++Ia  +   Rt+ ++++++
  Thhalv10014613m  5 VWTRSEDKMFEQALVLFPEGspnRWERIADQLH--RTAVEVRDHY 47
                     7*******************************7..*********9 PP
2Myb_DNA-binding42.91.2e-13100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Thhalv10014613m 100 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.344155IPR017930Myb domain
SMARTSM007173.1E-9253IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-13459IPR009057Homeodomain-like
PfamPF002498.9E-7548IPR001005SANT/Myb domain
CDDcd001673.97E-7651No hitNo description
Gene3DG3DSA:1.10.10.602.3E-5650IPR009057Homeodomain-like
PROSITE profilePS5129418.26193149IPR017930Myb domain
SuperFamilySSF466892.77E-1695150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1696148IPR006447Myb domain, plants
SMARTSM007177.0E-997147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-1099143IPR009057Homeodomain-like
PfamPF002491.8E-11100144IPR001005SANT/Myb domain
CDDcd001676.97E-8100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSVWTRSE DKMFEQALVL FPEGSPNRWE RIADQLHRTA VEVRDHYEAL VHDVIEIDSG  60
RVDVPDYMDD SAAAAAGWDS AGQISFGSKH GESERKRGTP WTENEHKLFL IGLKRYGKGD  120
WRSISRNVVV TRTPTQVASH AQKYFLRQNS VKKERKRSSI HDITTVDTNL AMPGSNMDWS  180
GHHESPVHAQ QQQQQQQQQQ IMTEFGQQMT TPGHFEDFGF RM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014613m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937360.0AB493736.1 Arabidopsis thaliana At5g04760 mRNA for hypothetical protein, partial cds, clone: RAAt5g04760.
GenBankAY0509760.0AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
GenBankAY0911770.0AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398929.11e-166transcription factor DIVARICATA
SwissprotQ8S9H78e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LDA01e-165V4LDA0_EUTSA; Uncharacterized protein
STRINGXP_006398929.11e-166(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-130MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]