PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014579m | ||||||||
Common Name | EUTSA_v10014579mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25257.2 Da PI: 10.5323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 82 | 132 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + r++lg+f+tae Aa+a+++a+++++g+ Thhalv10014579m 82 RYRGVRQRP-WGKWAAEIRDP-----HkaVRVWLGTFDTAEAAARAYDEAALRFRGN 132 7********.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-33 | 82 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 82 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-23 | 82 | 140 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.607 | 82 | 139 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 82 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-12 | 83 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-15 | 90 | 141 | No hit | No description |
PRINTS | PR00367 | 5.4E-12 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSAMVSALTQ VVSARSLTSS SFETQGTNSS SSSVGHERRK LGINSAIPLS TSSLDRVESF 60 HSPIEESTSK ALPEEVKENR RRYRGVRQRP WGKWAAEIRD PHKAVRVWLG TFDTAEAAAR 120 AYDEAALRFR GNKAKLNFPE DVRILPPRLP APRPPSPLLS SATVKDVGKK DMRDYWSYFQ 180 LLQTSDQRTL FGRGQEESTN VLKHSPTERS LPPSSSGPSS SDFPGPSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 81 | 142 | 4 | 66 | ATERF1 |
3gcc_A | 1e-22 | 81 | 142 | 4 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014579m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402191.1 | 1e-165 | ethylene-responsive transcription factor ERF110 | ||||
Swissprot | Q70II3 | 7e-74 | EF110_ARATH; Ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | V4LIV1 | 1e-164 | V4LIV1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402191.1 | 1e-165 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 9e-65 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014579m |
Entrez Gene | 18018279 |