PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014575m | ||||||||
Common Name | EUTSA_v10014575mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26258.6 Da PI: 6.9733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa a+++a++k++g Thhalv10014575m 45 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEEAALAYDRAALKFKG 94 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 44 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-38 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.974 | 45 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-23 | 45 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.71E-34 | 45 | 103 | No hit | No description |
Pfam | PF00847 | 2.8E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MISSLSRAIE YPTSDGQESS DPPVKQELDK SDQLQQDQDQ PRRRHYRGVR QRPWGKWAAE 60 IRDPKKAARV WLGTFETAEE AALAYDRAAL KFKGTKAKLN FPERVQGPST TTYVASQTGF 120 DHAPRGGSEL MNSPPPRLGP STTTTAPTSW PTNYNQDILQ YAQLLTSNND VDLSYYTSSL 180 FSQQQQPFST PSSSSSSTFT SQQTQQQQQQ QQQQHEEEKS YGYHYYSYPR E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-27 | 44 | 105 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014575m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353035 | 0.0 | AK353035.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-P22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399824.1 | 1e-169 | ethylene-responsive transcription factor ERF113 | ||||
Swissprot | Q9LYU3 | 5e-89 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | E4MWY8 | 1e-168 | E4MWY8_EUTHA; mRNA, clone: RTFL01-19-P22 | ||||
TrEMBL | V4LFT0 | 1e-168 | V4LFT0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399824.1 | 1e-168 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 5e-60 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014575m |
Entrez Gene | 18019327 |