PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014566m | ||||||||
Common Name | EUTSA_v10014566mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25246.2 Da PI: 4.9801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.3 | 1.1e-14 | 66 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++G+r + +g+Wv+eIr+p++ ++r++lg++ +e+Aa+a++ a+++l+g Thhalv10014566m 66 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 115 5699**975..6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.51E-17 | 66 | 123 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.243 | 67 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 67 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.90E-16 | 68 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-24 | 68 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-8 | 68 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 105 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSNTNSPTTG NQQTTTFRVA SIALPSKPYD QSPQSSPCSS SSPRPSLTSG VSPARRTTTG 60 LSGRHSFFRG IRLRNGKWVS EIREPRKTTR IWLGTYPVPE MAAAAYDVAA LALKGSDAVL 120 NFPGLASTYV APASNSAADI RAAAARAAEM KQPDPGGAER VENSGRPGKK EEEEEEEALL 180 SCSLEFMDEE AMLNMPSLLT EMAEGMLMSP PRMTNPTMDD SPENHEGDSL WSYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 60 | 123 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014566m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401877.1 | 1e-172 | ethylene-responsive transcription factor ERF025 | ||||
Swissprot | Q9FJ90 | 1e-103 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | V4KZD2 | 1e-170 | V4KZD2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401877.1 | 1e-171 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13457 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-86 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014566m |
Entrez Gene | 18016404 |
Publications ? help Back to Top | |||
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