PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014503m | ||||||||
Common Name | EUTSA_v10014503mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 248aa MW: 25460.3 Da PI: 10.67 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.4 | 5.1e-38 | 28 | 182 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg.... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + Thhalv10014503m 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvr 117 79**************************************************************99999777.2222222222220...13444 PP TCP 89 ................................................................k 89 + Thhalv10014503m 118 aeegdsggggggvggglsvghtmgasliggggsgggfwavparpdfgqvwsfaagappemlftqQ 182 44444556677777777777777777777777777777777777777777776555555555442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.6E-33 | 34 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTNNDGAGTN GVIIEQTSST VNKGSLNAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST ASLSTSSPFT LGKRVVRAEE 120 GDSGGGGGGV GGGLSVGHTM GASLIGGGGS GGGFWAVPAR PDFGQVWSFA AGAPPEMLFT 180 QQQQPATLFV RHQQQQQQQQ ASAAAAAMGE ASAARVGNYL PGHHLNLLAS LSGGATGSGR 240 REEDDRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00499 | DAP | Transfer from AT5G08330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014503m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412074 | 0.0 | AF412074.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. | |||
GenBank | AL392174 | 0.0 | AL392174.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project). | |||
GenBank | AY072620 | 0.0 | AY072620.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012628.1 | 1e-179 | transcription factor TCP21 | ||||
Swissprot | Q9FTA2 | 1e-118 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | V4N5K0 | 1e-177 | V4N5K0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399323.1 | 1e-178 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 7e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014503m |
Entrez Gene | 18017730 |
Publications ? help Back to Top | |||
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