PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014388m
Common NameEUTSA_v10014388mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 271aa    MW: 31509.3 Da    PI: 8.9536
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014388mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-121764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
  Thhalv10014388m 17 KGLWSPEEDQKLKSFIVSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding538.1e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++ ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
  Thhalv10014388m  70 RGTFSAEEEDTILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9581264IPR017930Myb domain
SuperFamilySSF466895.14E-2714111IPR009057Homeodomain-like
SMARTSM007179.8E-81666IPR001005SANT/Myb domain
PfamPF002492.7E-101764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-181871IPR009057Homeodomain-like
CDDcd001678.04E-62064No hitNo description
PROSITE profilePS5129424.90465119IPR017930Myb domain
SMARTSM007175.3E-1669117IPR001005SANT/Myb domain
PfamPF002498.1E-1670115IPR001005SANT/Myb domain
CDDcd001672.66E-1072115No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2572118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FIVSQGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEDT ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKRWL  120
KSQPQLKTQR SNLTESSSSS LLSCENRNLE RLDHVISFQK VAEKPYSSPS QESNKNMMSD  180
SNKLPKLFFS EWIGSSDPYV DYSSAFKDSM HINQNQDRIE DEELMMINKS YSSVLESDVM  240
FHTEFQQPDH EYANYYSSGE FFINNDVNYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23171187107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014388m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401845.10.0transcription factor LAF1
SwissprotQ9M0K41e-93LAF1_ARATH; Transcription factor LAF1
TrEMBLV4LTS70.0V4LTS7_EUTSA; Uncharacterized protein
STRINGXP_006401845.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-139myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]