PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014369m

Common Name

EUTSA_v10014364mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YA

Protein Properties

Length: 274aa MW: 29815.7 Da PI: 6.9195

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014369m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.3	2.8e-29	172	227	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rak+e e+k+ +rkpylheSRhkhA+rR+R+sgGrF Thhalv10014369m 172 QEPVFVNAKQYEGILRRRKARAKAELERKV--INRKPYLHESRHKHAMRRARASGGRF 227 69*************************9..89*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.8E-31	170	230	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.175	171	230	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-25	173	227	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-22	174	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	176	196	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-22	204	227	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MQSKPGRGNE AEVDHHADQQ PMMYPEPWWK NNSFGVVPQA RPSGIPSNSS SLECPNGSES 60 NDVHSASEDG ALNGENDGAW KDSQAATSSR SDNRGVEGND AAHLAASMHN THEQQLVQPP 120 ELVGHYIACV PNPYQDPYYG GMMGAYGHQP LGFRPYLGMP RARTALPLDM TQEPVFVNAK 180 QYEGILRRRK ARAKAELERK VINRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEASEDAA 240 AGREREKGSA TNSSGSEPVE TDSNETLNSA GAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-15	171	227	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	220	RHKHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014369m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317299	0.0	AK317299.1 Arabidopsis thaliana AT5G12840 mRNA, complete cds, clone: RAFL21-66-A21.
GenBank	Y13720	0.0	Y13720.1 Arabidopsis thaliana mRNA for Hap2a transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399769.1	0.0	nuclear transcription factor Y subunit A-1 isoform X2
Swissprot	Q9LXV5	1e-171	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	V4LFM5	0.0	V4LFM5_EUTSA; Uncharacterized protein
STRING	XP_006399770.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	1e-162	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Thhalv10014369m
Entrez Gene	18018768

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]