PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014157m
Common NameEUTSA_v10014157mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 314aa    MW: 36076.1 Da    PI: 6.8019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014157mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18118170456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Thhalv10014157m 118 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 170
                      4568889*********************************************9 PP
2HD-ZIP_I/II128.43.1e-41116207192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el 
  Thhalv10014157m 116 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 207
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-19107174IPR009057Homeodomain-like
SMARTSM003892.6E-17115176IPR001356Homeobox domain
PROSITE profilePS5007116.552116172IPR001356Homeobox domain
CDDcd000868.17E-16117173No hitNo description
PfamPF000463.2E-15118170IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-19120180IPR009057Homeodomain-like
PRINTSPR000311.2E-5143152IPR000047Helix-turn-helix motif
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5152168IPR000047Helix-turn-helix motif
PfamPF021836.6E-15172211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MYMYEEERNT IINNQEGLRL EMAFPQHGFM FQQLHEDNTH HLPSPTSLPS CPPHLFYGGG  60
GGGGNYMMNR SMSFTGVSDH HHLTQKSPTT TNMNDQDQVG EEDNLSDDGS HMMLGEKKKR  120
LNLEQVRALE KSFELGNKLE PERKMQLAKA LGLQPRQIAI WFQNRRARWK TKQLERDYDS  180
LKKQFDVLKS DNDSLLAHNK KLHAELVALK KQDRKESAKI IKRELAEASW SNNESTENNN  240
NNSDINHVNM IKDLFPSSIR SATTTSTSAH IDHQMVQDQG FCNMFSGIDE TTSASYWAWP  300
DQQQQHHNHH QFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014157m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400032.10.0homeobox-leucine zipper protein HAT7
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLV4KU720.0V4KU72_EUTSA; Uncharacterized protein
STRINGXP_006400032.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-151homeobox 3