PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014143m
Common NameEUTSA_v10014143mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 317aa    MW: 36738.5 Da    PI: 9.8395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014143mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-1819110196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffkvl ++d +++ +  +p +f+++++ +ke s++++l+ ++g sW +k+  +++ +  y+ ++GW +F ++n+L   + ++F+++g+++f   
  Thhalv10014143m  19 FFKVLRKEDLSTEIMRAIPHDFIRSIS-NKEFSFKMVLKLPWGSSWPIKI--SRNERFyYMEKSGWDKFLSDNDLGHDELLTFTHKGHMCF--S 107
                      99************************6.5689******************..899888566679**********************99999..4 PP

                      EEE CS
               B3  94 vkv 96 
                      v +
  Thhalv10014143m 108 VNI 110
                      444 PP
2B3352.5e-112253041396
                      TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ l + kkfa+ h+ k+++  + ++ + ++ rsW+vk+ + + + +   ++ GW + +++  L++gD+++F+l++   +e+v++v
  Thhalv10014143m 225 LKFLAVRKKFADMHMPKETT--MFKIHHsKEKRSWKVKYVVsDICES--RFSPGWVRLAREFVLQVGDVCTFELIK--PAEMVLSV 304
                      4568899****999866444..5555553778*******77444444..4899********************987..55556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-1814114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-1814118IPR015300DNA-binding pseudobarrel domain
CDDcd100177.89E-1517111No hitNo description
PfamPF023621.9E-1519110IPR003340B3 DNA binding domain
PROSITE profilePS5086312.44919114IPR003340B3 DNA binding domain
SMARTSM010194.8E-1919114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-15213307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-15213309IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039213308IPR003340B3 DNA binding domain
CDDcd100173.14E-9214296No hitNo description
SMARTSM010194.1E-12216308IPR003340B3 DNA binding domain
PfamPF023629.6E-9219303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTKNSCFGQI IEEGDNPGFF KVLRKEDLST EIMRAIPHDF IRSISNKEFS FKMVLKLPWG  60
SSWPIKISRN ERFYYMEKSG WDKFLSDNDL GHDELLTFTH KGHMCFSVNI YQIDCKEILR  120
PKKTATIASS SRNKREQGKN IYNDVKEEEI ESLSESLSFP GSETDESTGR KLKQRRKINL  180
GKKKVEEAEK TKKKKKNVDT DCDHSEAGTS SLVPKFTLTI KKSYLKFLAV RKKFADMHMP  240
KETTMFKIHH SKEKRSWKVK YVVSDICESR FSPGWVRLAR EFVLQVGDVC TFELIKPAEM  300
VLSVTKKRQC DVCEMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169183RKLKQRRKINLGKKK
2181195KKKVEEAEKTKKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014143m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011790.10.0B3 domain-containing protein At5g18090
SwissprotQ9FK611e-121Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLV4N8010.0V4N801_EUTSA; Uncharacterized protein
STRINGXP_006400353.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]