PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014081m | ||||||||
Common Name | EUTSA_v10014081mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 37639.6 Da PI: 8.7628 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.8 | 8.4e-57 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Thhalv10014081m 17 LPPGFRFHPTDEELITHYLHKKVLDIDFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFR 109 79**************************99.88***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg+kt+Wvmheyrl Thhalv10014081m 110 -GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 142 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-65 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.161 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-30 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
METFGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DIDFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 RIGSYGTGLP PLTDSSPYND KTKTEPIYVP CFSNQTETRG TILNCYSNPA LSSIQPDFLQ 240 RIPLYQPQSL YVSENLQNSN PILAQEQSVS QAMIENSRRQ SFKTLSISQE TGVSNTDISS 300 DFEFGRKGFD HQEVPSSSAG PVDLEPFWNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-57 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014081m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228027 | 0.0 | AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06. | |||
GenBank | BT006419 | 0.0 | BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399249.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | V4LE63 | 0.0 | V4LE63_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399249.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014081m |
Entrez Gene | 18018608 |
Publications ? help Back to Top | |||
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