PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014069m
Common NameEUTSA_v10014069mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 335aa    MW: 36694 Da    PI: 9.2388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014069mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.43e-1272116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Thhalv10014069m  72 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 116
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.06E-1666122IPR009057Homeodomain-like
PROSITE profilePS5129413.75867121IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-670122IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1870119IPR006447Myb domain, plants
SMARTSM007179.6E-1071119IPR001005SANT/Myb domain
PfamPF002496.6E-1072116IPR001005SANT/Myb domain
CDDcd001671.46E-774117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVSRNPNPQD GYFLDPNGGM TVPAIGPFTA AVSSSPTTSS TAVAVTDATA TVSSSEDLSK  60
KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF IGSKTVIQIR SHAQKYFLKV  120
QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QPQVPGSFRS TCEPNDPSYM FRPESSSMLM  180
TSPTTAAAAP WTNNLQTISF TTQPKAGAGA NNNNCSSSSE NTNTPRPRSN RDTSDRGIPG  240
HSLRVLPDFA QVYSFIGSVF DPYASNHLQK LKKMDPIDVE TVLLLMRNLS INLSSPDFED  300
HRRLLSSYDI GSETATDHGG VSKTLNNEPP EIST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014069m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503030.0AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020020.0BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258820.0BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401794.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLV4LLA00.0V4LLA0_EUTSA; Uncharacterized protein
STRINGXP_006401794.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-156MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]