PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014050m
Common NameEUTSA_v10014050mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 338aa    MW: 38114.3 Da    PI: 6.3192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014050mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d ++++G g+W++ ++  g++R++k+c++rw +yl
  Thhalv10014050m 14 KGPWTQEEDEKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding56.56.5e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++ +lG++ W++Ia  ++ gRt++++k++w+++l
  Thhalv10014050m  67 RGNFTEEEEQTIINLHSLLGNK-WSSIAGNLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.613961IPR017930Myb domain
SuperFamilySSF466893.34E-3211108IPR009057Homeodomain-like
SMARTSM007176.9E-161363IPR001005SANT/Myb domain
PfamPF002492.3E-171461IPR001005SANT/Myb domain
CDDcd001673.92E-121661No hitNo description
PROSITE profilePS5129427.77462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2765116IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1667112IPR001005SANT/Myb domain
CDDcd001675.91E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTQE EDEKLIDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF TEEEEQTIIN LHSLLGNKWS SIAGNLPGRT DNEIKNYWNT HLRKKLLQMG  120
IDPVTHRPRT DHLNVLAALP QLMAAANFNS LLNLNQNVQL DATTLAKAQL LHNMIQALSI  180
NNNNNPSSSS SLTMQSNNNL FGQSSYLESL GQSQNFSHIL DDNNDEHLIV KNQTTAHPFD  240
SFSSSIQIDA HDDHISLPLL VPASPEESKQ SQVMIKKKDI ANDHHHHLDT SNPSSSNSTF  300
TQDHIQPWSD IIDEEASDSY WKEIIEQTCS EPWPFPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-311211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014050m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400219.10.0transcription factor MYB41 isoform X1
RefseqXP_024011444.10.0transcription factor MYB41 isoform X1
SwissprotQ9S9Z22e-89MYB93_ARATH; Transcription factor MYB93
TrEMBLV4LGY10.0V4LGY1_EUTSA; Uncharacterized protein
STRINGXP_006400219.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-172myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]