PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014028m
Common NameEUTSA_v10014028mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 341aa    MW: 38187.7 Da    PI: 6.3111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014028mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ede+lv++v+++G  +W++ ++  g++R++k+c++rw +yl
  Thhalv10014028m 14 KGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ ++++++ lG++ W+tIa++++ gRt++++k++w+++l
  Thhalv10014028m  67 RGKFSQDEEQTILNLHAVLGNK-WSTIANHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.363961IPR017930Myb domain
SuperFamilySSF466891.12E-3111108IPR009057Homeodomain-like
SMARTSM007173.6E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-171461IPR001005SANT/Myb domain
CDDcd001673.16E-121661No hitNo description
PROSITE profilePS5129426.75162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2765117IPR009057Homeodomain-like
SMARTSM007176.1E-1666114IPR001005SANT/Myb domain
PfamPF002498.0E-1667112IPR001005SANT/Myb domain
CDDcd001675.38E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRSPRSDDS GLKKGPWTPD EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILN LHAVLGNKWS TIANHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFSSLSQLI SLSSNLRGIV DVQQQFPTDQ EQTMLKLQTE MAKLQLFQYL  180
LQPPSMNNNI NPNDFDTLGL LNSIASFKET SNTPSNNLDL GSYLQDFNSL PSLKTLNSNI  240
GPSPVFPQNP DDNHFKFFSQ RETNLPVSPI WLSDPSSSTQ SLLPSLDPSS AVSDDLIRNQ  300
YVIEDVNSNL TSSSCQESGA SASAAWPDHL LDDSIFSDIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014028m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756600.0KM975660.1 Brassica napus MYB transcription factor 92.1 (MYB92.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399522.10.0transcription factor MYB92
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLV4KSR40.0V4KSR4_EUTSA; Uncharacterized protein
STRINGXP_006399522.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.10.0myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]