PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014027m
Common NameEUTSA_v10014027mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 341aa    MW: 38028.6 Da    PI: 7.3953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014027mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18189243256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Thhalv10014027m 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243
                      788899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41189279192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk
  Thhalv10014027m 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 279
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-18168243IPR009057Homeodomain-like
PROSITE profilePS5007116.827185245IPR001356Homeobox domain
SuperFamilySSF466893.68E-18186254IPR009057Homeodomain-like
SMARTSM003897.8E-17187249IPR001356Homeobox domain
CDDcd000861.70E-15188246No hitNo description
PfamPF000461.2E-15189243IPR001356Homeobox domain
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
PfamPF021832.8E-11245279IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26245288IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELALCLGEN TNKLSFLEKP SKINNPSASS TSTSDKNRGF CMSLDVGFDG HKSLSPSSLS  60
PSLEDEKKKL APRAKNSDGI RVSSSVDPSL QLQLHFPWLP ENSRQGGRML PVAAEVAEEE  120
EEEEEEEEAV PSMSLSPPNS VTSSFRLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED  180
NDDENGTPRK KLRLSKDQSA FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA  240
RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPLYMQLPA TTLTMCPSCE  300
RVATSAPQPS TSAAHNIGLS TSSFHSPLIP VKPRPAKQVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014027m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399145.10.0homeobox-leucine zipper protein HAT14
SwissprotP466650.0HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLV4LLB90.0V4LLB9_EUTSA; Uncharacterized protein
STRINGXP_006399145.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-170homeobox from Arabidopsis thaliana