PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013919m
Common NameEUTSA_v10013919mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 360aa    MW: 39284.1 Da    PI: 6.6574
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013919mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.8e-091958340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                     +r C+ +++  ++ fC+ ++ +lC +C + +H+   H++v
  Thhalv10013919m 19 ARSCDACKSVAATVFCRVDSAFLCITCDTRIHSFtrHERV 58
                     578******99*********************65778865 PP
2zf-B_box28.14.3e-0958103342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Thhalv10013919m  58 VWVCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
                      689*****************************66999999999986 PP
3CCT69.11.2e-23291334144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+R+FeK+irY+sRKa+AesRpR+KGrF+k++
  Thhalv10013919m 291 REARVLRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKRT 334
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1961760IPR000315B-box-type zinc finger
SMARTSM003363.1E-71760IPR000315B-box-type zinc finger
PfamPF006434.8E-72058IPR000315B-box-type zinc finger
CDDcd000212.01E-82060No hitNo description
PROSITE profilePS5011910.72256103IPR000315B-box-type zinc finger
PfamPF006434.4E-757103IPR000315B-box-type zinc finger
CDDcd000211.32E-859103No hitNo description
SMARTSM003364.6E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.827291333IPR010402CCT domain
PfamPF062031.6E-17291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGFGLKSIKS ISGGWGAAAR SCDACKSVAA TVFCRVDSAF LCITCDTRIH SFTRHERVWV  60
CEVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA ETAVAKISAS  120
TFGVLGSGTT VDLSAVPVMG HSEDLGLCPW LLPNDFNEPA KVEIGTEMKS SDFMFSDFDR  180
LIDFEYPNSF NHQPPHNSAG ADSLVPVQTK TEPLPLTNND HCFDIDFCRS KLSAFTYPSQ  240
SISHSVSTSS LEYGVVPDGN TSVSEISIPF KRSTITGSTA TTGDQASSMD REARVLRYRE  300
KRKNRRFEKT IRYASRKAYA ESRPRIKGRF AKRTETENDD VFLSHVYASA AQYGVVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013919m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526790.0AK352679.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401182.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA90.0V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_006401182.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]