PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013895m
Common NameEUTSA_v10013895mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 366aa    MW: 40567.6 Da    PI: 6.3192
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013895mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-061052440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     + C+++ +   + +C+ ++ +lC +C  + H        H++v
  Thhalv10013895m 10 QACDTCRSAACTVYCRADSAYLCTSCDAQVHAAnrvasrHERV 52
                     57******99*********************556677778776 PP

2zf-B_box35.32.4e-115297342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      r+C+ +e+ ++ +fC+ +   lC  C +++H+       H++vp+
  Thhalv10013895m 52 VRVCESCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97
                     689*****************************66899999**9997 PP

3CCT675.2e-23296340145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      Rea+++RY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  Thhalv10013895m 296 REARVMRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRKE 340
                      9*****************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893754IPR000315B-box-type zinc finger
SMARTSM003368.0E-8754IPR000315B-box-type zinc finger
CDDcd000211.59E-71254No hitNo description
PROSITE profilePS5011912.4435097IPR000315B-box-type zinc finger
PfamPF006434.1E-95297IPR000315B-box-type zinc finger
CDDcd000214.92E-105397No hitNo description
SMARTSM003361.2E-125597IPR000315B-box-type zinc finger
PfamPF062033.6E-17296338IPR010402CCT domain
PROSITE profilePS5101716.648296338IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLKEESNWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AANRVASRHE RVRVCESCER  60
APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPV SGDSYSSMAT NHSSETTLTT  120
DPENRQVVGQ EEEDEDEAEA ASWLLPNSGR NSGNNNNNNN NSQNNGLSIG DEYLDLVDYN  180
SGLDKQFTDE SNQYHQEDCN VPQRSYGGDG VVPLRVEESK GHHMHQEQYN FEFGFTNVSS  240
GAHRSSNGSP SHMVSHIGAV PESATSDTTV SHPRSPKAVA EQLPDPPTQM LSPMDREARV  300
MRYREKKKMR KFEKTIRYAS RKAYAETRPR IKGRFAKRKE VDAEADKAFS TMIMFDTGYG  360
IVPSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309REKKKMR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013895m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400111.10.0zinc finger protein CONSTANS-LIKE 1
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLV4LD070.0V4LD07_EUTSA; Uncharacterized protein
STRINGXP_006400111.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-180CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]