PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10013895m | ||||||||
Common Name | EUTSA_v10013895mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | CO-like | ||||||||
Protein Properties | Length: 366aa MW: 40567.6 Da PI: 6.3192 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 10 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+++ + + +C+ ++ +lC +C + H H++v Thhalv10013895m 10 QACDTCRSAACTVYCRADSAYLCTSCDAQVHAAnrvasrHERV 52 57******99*********************556677778776 PP | |||||||
2 | zf-B_box | 35.3 | 2.4e-11 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +++H+ H++vp+ Thhalv10013895m 52 VRVCESCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97 689*****************************66899999**9997 PP | |||||||
3 | CCT | 67 | 5.2e-23 | 296 | 340 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e Thhalv10013895m 296 REARVMRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRKE 340 9*****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.0E-8 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-7 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.443 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-9 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.92E-10 | 53 | 97 | No hit | No description |
SMART | SM00336 | 1.2E-12 | 55 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.6E-17 | 296 | 338 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 296 | 338 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MLKEESNWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AANRVASRHE RVRVCESCER 60 APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPV SGDSYSSMAT NHSSETTLTT 120 DPENRQVVGQ EEEDEDEAEA ASWLLPNSGR NSGNNNNNNN NSQNNGLSIG DEYLDLVDYN 180 SGLDKQFTDE SNQYHQEDCN VPQRSYGGDG VVPLRVEESK GHHMHQEQYN FEFGFTNVSS 240 GAHRSSNGSP SHMVSHIGAV PESATSDTTV SHPRSPKAVA EQLPDPPTQM LSPMDREARV 300 MRYREKKKMR KFEKTIRYAS RKAYAETRPR IKGRFAKRKE VDAEADKAFS TMIMFDTGYG 360 IVPSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 303 | 309 | REKKKMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10013895m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400111.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 0.0 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | V4LD07 | 0.0 | V4LD07_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400111.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-180 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10013895m |
Entrez Gene | 18018864 |
Publications ? help Back to Top | |||
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