PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013862m
Common NameEUTSA_v10013862mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRF
Protein Properties Length: 372aa    MW: 40852.7 Da    PI: 8.8261
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013862mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24115157244
              WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       epgrCrRtDGKkWRCsr+v++++k+CErHlhrgr rsrk++e
  Thhalv10013862m 115 LEPGRCRRTDGKKWRCSREVVSNHKYCERHLHRGRPRSRKHVE 157
                      69***************************************97 PP
2QLQ52.91.1e-186597234
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                     +FT+aQl +L++Q+++yKy++a++PvP +Ll++
  Thhalv10013862m 65 PFTNAQLKELERQAMIYKYMIASVPVPFDLLVP 97
                     9*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.8E-1064100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.34765100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.5E-126596IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.921114158IPR014977WRC domain
PfamPF088791.0E-19116157IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDFLKVSDKT TTTPFRSGSL FSLNQQQYKE SSFGFRDMEI HPHSHSHVIT PYAGNGVLGC  60
YYYYPFTNAQ LKELERQAMI YKYMIASVPV PFDLLVPPSS SSASPCNNKN MAGDLEPGRC  120
RRTDGKKWRC SREVVSNHKY CERHLHRGRP RSRKHVELPY SRPSNNGGSE RNKDLRNVPQ  180
KVSVTSIKDK ILEPKEVSSS PLSNYRESTV SQIFPVSATI EQDKKYLNFI DIWSDGVRSS  240
EKQSTTSTPA SSSNGNLSLY SLDLSMGGNN LMGHDEMSLI QMGLGVIGSG RGDPHGYGPY  300
GVVSSLDEMS SWLAPTSATP GGPLAEILRP NPNSAFSGDM ESYSVTATPT PSSSPSRVAK  360
KVTVSDESSQ I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013862m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401675.10.0growth-regulating factor 7
SwissprotQ9FJB80.0GRF7_ARATH; Growth-regulating factor 7
TrEMBLV4LTC90.0V4LTC9_EUTSA; Uncharacterized protein
STRINGXP_006401675.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.10.0growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]