PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013773m
Common NameEUTSA_v10013773mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 389aa    MW: 43697.4 Da    PI: 6.3809
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013773mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-083273602154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Thhalv10013773m 327 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 360
                      469*****************************87 PP
2ELK292.5e-10281302122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Thhalv10013773m 281 ELKHELKQGYKEKIVDIREEIL 302
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-19115159IPR005540KNOX1
PfamPF037902.0E-17118157IPR005540KNOX1
SMARTSM012564.3E-27171227IPR005541KNOX2
PfamPF037911.2E-19177226IPR005541KNOX2
PfamPF037898.8E-7281302IPR005539ELK domain
PROSITE profilePS512139.969281301IPR005539ELK domain
SMARTSM011886.1E-4281302IPR005539ELK domain
PROSITE profilePS5007111.726301364IPR001356Homeobox domain
SuperFamilySSF466895.13E-16303367IPR009057Homeodomain-like
SMARTSM003892.4E-11303368IPR001356Homeobox domain
CDDcd000863.75E-11304365No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25308365IPR009057Homeodomain-like
PfamPF059201.1E-17321360IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAFHHNHFNH FTDQQHEPPP PPPPQQQHFH ESAPPNWLLR SDNNFLNLHT AAATSSDSPS  60
SAAANQWLSR SSSFLQRGAA SNNNNAASGD VIDDINGGEE SMIGEKKEAE RWQNARHKAE  120
ILSHPLYEQL LSAHVACLRI ATPVDQLPRI DAQLAQTQNV VAKYSSLEAA AQGLIAGDEK  180
ELDHFMTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSFTGVSP GEGTGATMSE  240
DEDEQVDSDA HLFDGSLDGL GFGPLVPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE  300
ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR  360
NWHSNPSSST VSKNKRRSNA GENSGRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12304368872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013773m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399606.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLE4MXU10.0E4MXU1_EUTHA; mRNA, clone: RTFL01-40-P19
TrEMBLV4LBL50.0V4LBL5_EUTSA; Uncharacterized protein
STRINGXP_006399606.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]