PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10013758m | ||||||||
Common Name | EUTSA_v10013758mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 393aa MW: 44067.4 Da PI: 4.9514 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.9e-34 | 51 | 142 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++l+ +isw +g sfvv+d+ efa+ vLpk Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +gkk+ll+ Thhalv10013758m 51 FLSKTYDLVDDPRLDPVISWGLTGASFVVWDPLEFARIVLPKNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRGKKHLLK 135 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r++s Thhalv10013758m 136 NIHRRRS 142 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.63E-33 | 46 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-55 | 47 | 140 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.8E-36 | 48 | 140 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.9E-18 | 51 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.3E-30 | 51 | 140 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.9E-18 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 90 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.9E-18 | 102 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MRPEKDGVTK PTPISLPVST RPESTIPGSL YVDTDMCSPV PILQGNPIPP FLSKTYDLVD 60 DPRLDPVISW GLTGASFVVW DPLEFARIVL PKNFKHNNFS SFVRQLNTYG FRKIDTDKWE 120 FANEAFLRGK KHLLKNIHRR RSPQSNQTCS SSSSQSQGSP TEVGGEIEKL RKERRALMEE 180 MVELQQHHRG TARHMDTVNQ RLRAAEQRQK QLLSFLAKLF QNPGFLERLK NLKGGGGGGA 240 LGSEKARRKF IKHQDSPTGG EIVKYEADDW ERLLMSDEEI ENFPLSRQEG TDPKGKNLMN 300 PSEEEEMMIP DNLVSFSSPA EVDAIIKQEE TWSMGFDATT LDVWGNTVDY TVSEFGSVAE 360 TATGGLPDVC WEQFAADFSW PTGDDNMPTD DP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 48 | 145 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 1e-24 | 48 | 140 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 48 | 140 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 48 | 140 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10013758m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117318 | 0.0 | AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398830.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q8GYY1 | 0.0 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | V4LKE0 | 0.0 | V4LKE0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398830.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10950 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 0.0 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10013758m |
Entrez Gene | 18017920 |