PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013623m
Common NameEUTSA_v10013181mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 429aa    MW: 47470.2 Da    PI: 6.5454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013623mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567.2e-18165214255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Thhalv10013623m 165 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 214
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-23162234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-19164233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-15165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-14165216No hitNo description
SMARTSM003536.9E-13169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MMFTAGAQGS GGNERNVVDE NSNSNCSSYA AAASGFTLWD ESRSGKKGQT RKENNVGERA  60
NIRADVATTM GQWPVVERQS QSLTNNHLSG FSSRSSSQGS GLKSQSFMDM IRSAKGSSQD  120
DDLDDEEDFI MKKESSSTSQ SQRVDLRVKA DVRGSGNDQK LNTPRSKHSA TEQRRRSKIN  180
DRFQMLRQLI PNSDQKRDKA SFLLEVIEYI QFLQEKANKY ETPYQGWNHE PAKLLNWQRN  240
NQQLVPEGTV AFAPKLEEEK SNIPVSALAT AQGGTIDQSE TLNRAMPTTT PFPMSVQSNS  300
LFSPVIAGNP VTQFHTRVAS SETVEPSPSS RSLTQPLKEE GEEEDEEVHE GNISISSVYS  360
QGLVKTLREA LENSGVDLTK ASISVEIELA KQSSSFKDHE VREPISRSGN DDVRQTRKPK  420
RLKTNNRS*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013623m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399299.10.0transcription factor BIM1 isoform X3
RefseqXP_024012000.10.0transcription factor BIM1 isoform X3
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLV4LEB10.0V4LEB1_EUTSA; Uncharacterized protein
STRINGXP_006399300.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.30.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]