PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013428m
Common NameEUTSA_v10013428mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 477aa    MW: 52676.1 Da    PI: 4.6983
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013428mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36281202103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Thhalv10013428m  28 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKKLLK 112
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k +
  Thhalv10013428m 113 SISRRKPS 120
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.98E-3523117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.4E-3924117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6024117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MESVPESVPS ANSNSSSGPP PVNSVPPFLS KTYDMVDDPS TNEVVSWSSG NNSFVVWNVP  60
EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKKL LKSISRRKPS  120
HVQQNQQQTQ VQNSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATEHQLQ  180
NVGQKVQVME QRQQQMMSFL AKAVQSPGFL NQLVQQNNDG NRQIPGSNKK RRLPGDEQEN  240
RGGHGANGLN SQIVKYQPSI NEAAQTMLRQ FLNTSSSPRY ESVSNNPGSF LLGDVPSSNS  300
VDNGNSSNTV SGVTFPEVSS NSAHSGMNQI HEASLDHHPQ AKLVQPNLSP SPTQGVAAAA  360
SWSPESDLVG CETGNGECFD PIMAVLDASL EMEGDAVSPE GDGEINELLN GNPKLPGVQD  420
PFWEQFFTDE IPVTGDTDEN SDLVMEQEPN DWTRNQQQMN HLTEQMGLLS SETQMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251511719129Heat shock factor protein 1
5d5v_B1e-251511719129Heat shock factor protein 1
5d5v_D1e-251511719129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013428m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400223.10.0heat stress transcription factor A-1b
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLV4N7P10.0V4N7P1_EUTSA; Uncharacterized protein
STRINGXP_006400223.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]