PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013146m
Common NameEUTSA_v10013146mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 558aa    MW: 60101.3 Da    PI: 6.7349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013146mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30235294159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  Thhalv10013146m 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 294
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31220296IPR003657WRKY domain
SuperFamilySSF1182902.09E-27228296IPR003657WRKY domain
PROSITE profilePS5081128.69230296IPR003657WRKY domain
SMARTSM007741.5E-36235295IPR003657WRKY domain
PfamPF031066.8E-27236294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEVPLKLPTS DSLLKEKALG SVQFHEAIKV DGDHQELETA KAEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIIQQEP SNNPTQDQNM ATLAKVTTDL TSLDQERELV SLSLGRRSSS  120
PSDNTSKKEE KTDAISIEVK ADEELTKAGL TLGFNNGNGH EPNGSLSVEN PANSGMENSS  180
DQEAPGETWK SSKVTGKRSS PAPTSGGDVD GEAGQQNHVK RARVCVRARC DTPTMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCAEDM SILITTYEGT HSHPLPLSAT  300
TMASTTSAAA SMLLSGSSSS SSATEMIGNN LYDNSRFINN NKSFYSPTLH SPLHPTVTLD  360
LTAPQHSSSS SSLPSLNFNK FSNSFQRFSS TSLNFSSNPS SSSSNSSTLN LPAIWGNGYS  420
SYTPYPYNNV QFGTDLGKTV QNNQSLTETL TKALTSDPSF HSVIAAAISS MVGSNGEQRI  480
VGPRHPSSNN IQQTAATNNN KGCGGYFSSL LMSNIIANNQ TGASLDQPSS QLPPFSMFKN  540
SSSSPSTTNF VNKEEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21222296174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013146m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400030.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV4LNU90.0V4LNU9_EUTSA; Uncharacterized protein
STRINGXP_006400030.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72