PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012876m
Common NameEUTSA_v10012876mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 676aa    MW: 73127.2 Da    PI: 8.6188
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012876mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-094594912254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +++  LAk++gL+ +qV++WF N R +
  Thhalv10012876m 459 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 491
                      89*****************************87 PP
2BELL111.35.7e-36314382472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+ k k+kL+s+l+eV+krYkqy+eqlqtv++sFe+vaglg+a+pY+slAlka+S+hF+cLk+ai++q+
  Thhalv10012876m 314 ENGKNKSKLISMLDEVYKRYKQYYEQLQTVMGSFECVAGLGHAAPYASLALKALSKHFKCLKNAITDQL 382
                      78899*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-68253380IPR006563POX domain
PfamPF075262.7E-35258379IPR006563POX domain
CDDcd000862.63E-11435496No hitNo description
SMARTSM003894.0E-9435499IPR001356Homeobox domain
SuperFamilySSF466891.15E-16437502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-27439499IPR009057Homeodomain-like
PfamPF059202.2E-18452491IPR008422Homeobox KN domain
PROSITE profilePS5007111.645454495IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MLNKFFRLNV THLQNKDILD ILVFELNNTS YEKNDDIHIL DRASKRKQKK PLSLSLLTSR  60
FTVTIISYTV TLSLSLSHSA SRNHPFSMAD AYEPYHVLQQ SRRDKLRIPS IDSHFHFHPP  120
PPSSGSGSVF PLADSDFLAA GLFHSNNNNN NNNPISNPSY SNFMGFLGGP SSSSSSAVAV  180
AGDHSFNAGL SSGDVLVFKP EPLSLSLSSH PRLAYDLVGP GVVNSGFCRS AAEGAAAAVT  240
IASRSSGPLG PFTGYASILK GSRFLKPAQM LLDEFCNVGR GIYTDKVIDD DDSSLLFDPT  300
VENFCGVSDA GGGENGKNKS KLISMLDEVY KRYKQYYEQL QTVMGSFECV AGLGHAAPYA  360
SLALKALSKH FKCLKNAITD QLQVSANNKI QQQCGHAMNS ENKTDSLRFG GSDSSRGLCS  420
AGQRHGFPDH HAPVWRPHRG LPERAVTVLR AWLFDHFLHP YPTDTDKLML AKQTGLSRNQ  480
VSNWFINARV RVWKPMVEEI HMLETRQSQR SSSSSWRDDR STTTVFPDNN NNNPSSSAAQ  540
QRANNNSSPR RARNDEDVHG TTNNSNNNNS FLNAGNGGSG AVSFPYGIAS SNVPGMSSST  600
NGGVSLTLGL HHQIGLPEPF PMTTAQRFGL HGGSSGGGGG GESYGGGGGY EGQNRQFGRD  660
FIGGSNHQFL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16441499563Homeobox protein Meis2
4xrm_B2e-16441499563Homeobox protein Meis2
4xrs_A1e-16441498158Homeobox protein Meis1
4xrs_B1e-16441498158Homeobox protein Meis1
5bng_A1e-16441499159Homeobox protein Meis2
5bng_B1e-16441499159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012876m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5194910.0AJ519491.1 Arabidopsis thaliana mRNA for homeodomain protein vaamana (vaamana gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398666.20.0BEL1-like homeodomain protein 9
SwissprotQ9LZM80.0BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLV4L9080.0V4L908_EUTSA; Uncharacterized protein
STRINGXP_006398666.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.10.0TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]