PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012728m | ||||||||
Common Name | EUTSA_v10012728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 87749.7 Da PI: 5.8655 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.7e-24 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F +++ Thhalv10012728m 174 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDE 264 99****************************963.3445679************************************************..569 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ Thhalv10012728m 265 DGELRLGIRRS 275 9999****996 PP | |||||||
2 | Auxin_resp | 124.4 | 7.7e-41 | 299 | 380 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe+eds+err++G+v+gv dldp+rWpnSkWr+L Thhalv10012728m 299 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYTTSIRNPICIGTRFRMRFEMEDSPERRCAGVVTGVCDLDPYRWPNSKWRCL 380 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 165 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-42 | 168 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.21E-21 | 172 | 274 | No hit | No description |
PROSITE profile | PS50863 | 13.437 | 174 | 276 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-23 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-22 | 174 | 275 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 299 | 380 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.4E-10 | 666 | 743 | No hit | No description |
PROSITE profile | PS51745 | 21.899 | 668 | 750 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MEFDLNTEIA EVEDEEKDDG GVVGTGIEKG RLGISPSSSS SCSSGSSSSS STTVSASSIY 60 SELWHACAGP LTSLPKKGNV VVYFPQGHLE QDPLVSYSSP LEIPKFDLHP QIFCRVVNVQ 120 LLANKETDEV YTQVTLLPLQ EFSMLNVEGK EVRELGGEEE RNGSSSVKRT PHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT 240 TGWSIFVSQK NLVSGDAVLF LRDEDGELRL GIRRSARPRN GLPDSIIEKN SCSDILSLVA 300 NAVSTKSMFH VFYSPRATHA EFVIPYEKYT TSIRNPICIG TRFRMRFEME DSPERRCAGV 360 VTGVCDLDPY RWPNSKWRCL LVRWDESFVS DHQERVSPWE IDPSGSLPHL SIQSSPRLKR 420 PWAGLLDTTP PGNPITERGG FLDFEESVRP SKVLQGQENI GSASPLQGFD VMNRRILDFA 480 MQSHANPVLL SSRVKDRFGE FVDATSLDPA CSGVMDLDRF PRVLQGQEIC SLRSFPQIAG 540 FSPAATSGKP SLGYTDPFAY NQANKSSFYP LASQGIRSSH IPYQNPYNAG EKSSVHPINF 600 GGESRKLDAQ NEGGLPKNVT ADLPFKIDMM GKQKGGDFDM NASSECKLFG FSLPVETPAA 660 NPQSSSKRIC TKVHKQGSLV GRAIDLSRLN GYNDLLTELE RLFNMEGLLR DPEKGWRILY 720 TDSENDMMVV GDDPWHDFCN VVLKIHLYTK EEVENGNDDN KSCLEQAAVL MEASKSSSVS 780 QPDSSPTVAR V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-113 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldw_A | 1e-113 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldw_B | 1e-113 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldy_A | 1e-113 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldy_B | 1e-113 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012728m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400848.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | V4N965 | 0.0 | V4N965_EUTSA; Auxin response factor | ||||
STRING | XP_006400848.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012728m |
Entrez Gene | 18016921 |