PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012642m
Common NameEUTSA_v10012642mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-X1
Protein Properties Length: 883aa    MW: 99055.8 Da    PI: 8.3167
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012642mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.42e-05240268220
         zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                      G          +HkC ++CH G+CppC++
  Thhalv10012642m 240 GkvcnrvldcdIHKCREICHDGECPPCRE 268
                      455555555559***************85 PP
2zf-NF-X116.51.8e-05356375119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG H+C + CH+GpC + C+
  Thhalv10012642m 356 CGYHRCPERCHRGPCLEtCR 375
                      *****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359086150IPR019786Zinc finger, PHD-type, conserved site
PfamPF014222.5197214IPR000967Zinc finger, NF-X1-type
SMARTSM004388.1197215IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-8239287No hitNo description
PfamPF014224.2E-4249267IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-4249268IPR000967Zinc finger, NF-X1-type
CDDcd060087.82E-7292332No hitNo description
PfamPF014220.047302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038302321IPR000967Zinc finger, NF-X1-type
CDDcd060083.73E-9346395No hitNo description
PfamPF014220.0013356375IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035356376IPR000967Zinc finger, NF-X1-type
CDDcd060088.43E-7399447No hitNo description
PfamPF014220.036409427IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33409428IPR000967Zinc finger, NF-X1-type
CDDcd060081.13E-10426474No hitNo description
PfamPF014220.0053430454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012436455IPR000967Zinc finger, NF-X1-type
SMARTSM0043876493514IPR000967Zinc finger, NF-X1-type
PfamPF014224.8503513IPR000967Zinc finger, NF-X1-type
PfamPF0142277522531IPR000967Zinc finger, NF-X1-type
SMARTSM00438200522567IPR000967Zinc finger, NF-X1-type
PfamPF014220.078604615IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6604635IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41645663IPR000967Zinc finger, NF-X1-type
PfamPF0142217646662IPR000967Zinc finger, NF-X1-type
SMARTSM0043815708729IPR000967Zinc finger, NF-X1-type
PfamPF014228.1710722IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MAGPASTDFR WKSPPQPPPP PQQQIISDSD SDSGSDSDNH QHRHNDLSNS IFKAYLDCHS  60
SSSPSSIDLA KIQSFLSSSS SGAVSCLICL ERIKRTDPTW SCTSLCFAVF HLFCIQSWAR  120
QCLDLQAARA VTRQSSTPTE PDAVWNCPKC RSSYQKTEIP RRYLCYCGKE EDPPADNPWI  180
LPHSCGEVCE RPLSNNCGHC CLLLCHPGPC ASCPKLVKAN CFCGGVEDVR RCGHKLFSCG  240
KVCNRVLDCD IHKCREICHD GECPPCRERA VYRCCCGKLK EEKDCCERVF RCEASCENML  300
NCGKHVCERG CHSGECGLCP YQGKRSCPCG KKFYQGLSCD VAAPLCGGTC DKVLGCGYHR  360
CPERCHRGPC LETCRIVVTK SCRCGGTKKQ VPCHQELACE RKCQRMRDCA RHACRRRCCD  420
GECPPCSEIC GKKLPCRNHK CQSPCHQGLC APCPIMVTIS CACGETHFEV PCGTETNQKP  480
PRCRKLCHIT PLCRHGQNQK PHKCHYGACP PCRLLCDEEY PCGHKCKLRC HGPRPPPNRE  540
FMIKPTKKML NFHAESTPGS PCPRCPELVW RPCVGHHLAA EKMMVCSDRT QFACDNLCGN  600
PLPCGNHYCS FTCHPLDIRS SSLDKRSESC EKCDLRCQKE RTPRCQHPCP RRCHPEDCPP  660
CKTLVKRSCH CGAMVHAFEC IYYNTLSEKD QTKARSCRGP CHRKLPNCTH LCPEICHPGQ  720
CPSPEKCGKK VIVRCKCLTL KKEWLCQDVQ AAHRATGSDP KDVPKNQFGV GLLPCDSNCK  780
SKLQMAESVL QQRNVKEMEE KEEPSGKNAT KRRRRRERGQ DIKETSKLLK LAVATKKVVM  840
LVMLIAVLVA VSYYGYKGLL WLSDWMNEVE EQRQKSRRYP RI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1810815KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012642m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529480.0AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399023.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLV4N4Z00.0V4N4Z0_EUTSA; Uncharacterized protein
STRINGXP_006399023.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors