PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012447m
Common NameEUTSA_v10012447mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 1361aa    MW: 152517 Da    PI: 6.7646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012447mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00112501273323
                       ET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirt.H 23  
                       C    C+++F++k +L+ H r+ +
  Thhalv10012447m 1250 CYleGCKMTFKNKADLEAHKRNrC 1273
                       66668***************9876 PP
2zf-C2H212.80.0003512721295223
                       EET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                       +C+   Cgk F+ + +L+ H+r+H
  Thhalv10012447m 1272 RCTheGCGKKFRAHKYLVLHQRVH 1295
                       588889****************99 PP
3zf-C2H211.30.001113311357123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg sF+  s++ rH r+  H
  Thhalv10012447m 1331 YTCKvdGCGLSFRFVSDYSRHRRKsgH 1357
                       99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-141555IPR003349JmjN domain
PROSITE profilePS5118314.0211657IPR003349JmjN domain
PfamPF023752.1E-151750IPR003349JmjN domain
PROSITE profilePS5118435.155278444IPR003347JmjC domain
SMARTSM005587.5E-45278444IPR003347JmjC domain
SuperFamilySSF511979.34E-27287442No hitNo description
PfamPF023731.5E-37308427IPR003347JmjC domain
SMARTSM003556112481270IPR015880Zinc finger, C2H2-like
SMARTSM003550.05712711295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46412711300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-712721299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012731295IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-1012871329No hitNo description
Gene3DG3DSA:3.30.160.601.5E-913001325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0213011325IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.25813011330IPR007087Zinc finger, C2H2
PROSITE patternPS00028013031325IPR007087Zinc finger, C2H2
SuperFamilySSF576678.23E-913191353No hitNo description
Gene3DG3DSA:3.30.160.609.5E-1013261353IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3513311357IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1213311360IPR007087Zinc finger, C2H2
PROSITE patternPS00028013331357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1361 aa     Download sequence    Send to blast
MGNVEIPHWL KALPLAPVFR PTDTEFADPI AYISKIEKEA GAFGICKIIP PLPKPSKKYV  60
FYNLNKSLLR CPELASDVDI SKVCHEDRAV FTTRQQELGQ AVKRKKGGES SKSNSQRSGV  120
KQVWQSGGVY TLEQFESKSK TFYKSQLGTV KEVSPVVVEA LFWKAALEKP IYIEYANDVP  180
GSAFGEPEGH FRHFRQRKRR GRGSYQRKAE ISDESRVESG TDRNFSQPPS CKNGDTTLPE  240
VAKASHASPS KISQDLSKQK KMDIVDGMEG TSGWKLSNSS WNLQTIARSP GSVTRFMPDD  300
IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NYLHTGSPKT WYAVPADYAF EFEEVIRKNS  360
YGRNTDQLAA LTQLGEKTTL VSPEMIVASD IPCCRLVQNP GEFVVTFPRS YHVGFSHGFN  420
CGEAANFGTP QWLNVAKEAA VRRAAMNYLP MLSHQQLLYL LTMSFVSRVP RSLLPGGRSS  480
RLRDRQREER EFLVKKAFVE DILNENKNLS VLLREPGIRL VMWDPDLLPR HSALALAAAG  540
GPAASLPAEA KNELEDGHSV MQNKEKTTLL EELSLFMEKL NDVYYDDDDG QLNDFQVDSG  600
TLACVACGVL GFPFMCVVQP SKNALQDLSE RKGEIDAQEF TALSSENSDC VWNTSSRYIR  660
PRIFCLEHTI ELQRLLQSRG GLKFLVICHK DFQKFKAHAA IVAEEVKVPF SYDDVLLESA  720
SKEELSIIDL AIEDEESNEY GVDWTSKFGI NLRYCVKVRK NSPTKKIQHA LSLGGLFSDT  780
SHMLDMSTIK WLQRKSRSKA KPSSTSSFTS REHLEVKVDG KSGEKLDPQA GRREERIIQY  840
SRKKKLNSKP SGDQGQELAT EPKSEDSDDT CNKIANRSHL DSAIHSEMNN EIEDSERTIE  900
RNGVAFCENP RSSSFTGPHG HEHPEITVKL GLAFDGNITN NSSMVNGDSA EQTSVTREDQ  960
GHSMTSNNNG SNSSSHVVVS QTMLASTGDN HDGPIKLSGE HVCSYVSVRG VDEAVEMSDR  1020
EFEEPRSTVI NIEEEQQSQM VQPTKREAVP GDHTQVEGEE AMCTRENLCS EDIMHTVHQQ  1080
EETHSSAQLG TEVAETNVAS ENIVVDMIHD DETLASRDIL SSRNGDQASS NGLQAPDNEP  1140
SMEREVASSE NTEVIEAPIS NMVEAKKKRK MESVSETNDN PESSIGFIRS PCEGLRARGR  1200
RKATCETSSN IAELSDEEKK PTAKRLKKTP KTRSGSHHRE VSTTTDHNRC YLEGCKMTFK  1260
NKADLEAHKR NRCTHEGCGK KFRAHKYLVL HQRVHNDERP FLCSWKGCSM TFKWQWARTE  1320
HLRLHTGERP YTCKVDGCGL SFRFVSDYSR HRRKSGHYVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-55265458147346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-55265458147346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012447m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6645000.0AY664500.1 Arabidopsis thaliana early flowering 6 (ELF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398879.10.0probable lysine-specific demethylase ELF6 isoform X2
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLV4LD480.0V4LD48_EUTSA; Uncharacterized protein
STRINGXP_006398879.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]