PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012377m
Common NameEUTSA_v10012377mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 385aa    MW: 43559.6 Da    PI: 5.2967
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012377mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.8e-1184130254
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      +ykGV++   +g W A+I+       +kr++lg+f +a eAa a++ a  k++
  Thhalv10012377m  84 RYKGVFQQQ-NGHWGAQIYAG-----HKRIWLGTFKSATEAATAYDSASIKIR 130
                      69***9887.8*********3.....6********************999887 PP
2B381.86.6e-26209320196
                      EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                      f k+ltpsdv+k++rlv+pkk+a +h                gg+   +++++++d+   +W++k++y ++s+++ +t GW++Fvk+++Lke+D
  Thhalv10012377m 209 FTKKLTPSDVGKLNRLVIPKKYAVKHlpplsvdqnereegevGGS-VDDVEVVFYDKAKTQWKFKYCYMRTSQTFAFTIGWNRFVKEKKLKEND 301
                      89*****************************99877776665222.3899******************************************** PP

                      EEEEEE-SS.SEE..EEEE CS
               B3  79 fvvFkldgr.sefelvvkv 96 
                      ++vF+  ++  +f+ ++ v
  Thhalv10012377m 302 VIVFYQCNDeCGFKKMIDV 320
                      *****77776777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-2183143No hitNo description
SMARTSM003805.4E-1684147IPR001471AP2/ERF domain
PROSITE profilePS5103216.87184141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1584141IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1384142IPR016177DNA-binding domain
PfamPF008471.3E-584130IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.1E-31202326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-25207311IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-23208315No hitNo description
SMARTSM010192.4E-21209324IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674209322IPR003340B3 DNA binding domain
PfamPF023621.1E-22209320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRPFEEEPDH NALLATETEK VATETEKVAT ETEKVATETE KVATETEKVA TETEKVATET  60
EKVATETEKV ATETEKVASS GNARYKGVFQ QQNGHWGAQI YAGHKRIWLG TFKSATEAAT  120
AYDSASIKIR PHDANSHRNF PWSDSTVQEP EFQEDYTIEA VVNMIKDGTY QQKFRDFVRT  180
RSQMAATVGS KQSRGDEESN NCFSCKQLFT KKLTPSDVGK LNRLVIPKKY AVKHLPPLSV  240
DQNEREEGEV GGSVDDVEVV FYDKAKTQWK FKYCYMRTSQ TFAFTIGWNR FVKEKKLKEN  300
DVIVFYQCND ECGFKKMIDV QSNKMIDVQY FSDNGFVDPK GVNNKVDDST KTGNDFGPKL  360
EDEETKSAEE KKGGFMLFGV RIQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2220831113106DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012377m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006151.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-145RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLV4JY270.0V4JY27_EUTSA; Uncharacterized protein
STRINGXP_006393119.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-131RAV family protein