PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012356m
Common NameEUTSA_v10012356mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 361aa    MW: 40746.7 Da    PI: 8.0757
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012356mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.1e-124895154
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     ++ykGV +   +g W A+I+       + kr++lg+f +a eAa+a++ a  kl+
  Thhalv10012356m 48 TKYKGVVQQQ-NGHWGAQIYA------NhKRIWLGTFKSAAEAAAAYDSASIKLR 95
                     69****9888.8******999......44*********************99997 PP
2B3924.4e-29182280187
                      EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k+ltpsdv+k++rlv+pkk+a +h                g       +++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke
  Thhalv10012356m 182 FQKQLTPSDVGKLNRLVIPKKYAVKHlpfisddqnereegevG---GsvDDVEVVFYDKAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKE 272
                      99*****************************988777666652...044899****************************************** PP

                      T-EEEEEE-SS CS
               B3  77 gDfvvFkldgr 87 
                      +D++vF+   +
  Thhalv10012356m 273 NDVIVFY---N 280
                      ******9...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-64895IPR001471AP2/ERF domain
CDDcd000185.20E-1248108No hitNo description
SuperFamilySSF541712.62E-1449108IPR016177DNA-binding domain
SMARTSM003801.7E-1749112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1649106IPR001471AP2/ERF domain
PROSITE profilePS5103217.34649106IPR001471AP2/ERF domain
SuperFamilySSF1019362.88E-27180280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-30181280IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-26181279No hitNo description
PfamPF023624.7E-26182282IPR003340B3 DNA binding domain
SMARTSM010192.1E-22182293IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323182293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDIDQTGTET KTMETTSGSS DSVLRLTQSL KPTESTSTNF ALSNTATTKY KGVVQQQNGH  60
WGAQIYANHK RIWLGTFKSA AEAAAAYDSA SIKLRSFDAN SHRNFPWSDL TVHEPDFQVR  120
HTTEAVLNMI RDGSYQHKFR DYLRVKSQFV ANINIVGSKQ SRGGGGEGGQ ESNKCFTWML  180
LFQKQLTPSD VGKLNRLVIP KKYAVKHLPF ISDDQNEREE GEVGGSVDDV EVVFYDKAMR  240
QWKFRYCYWR SSQSFVFTRG WNGFVKEKNL KENDVIVFYN CDVPSNVKTL EGQSNNFLMI  300
DVQYFSGNGF VDPKGLNKTA HEISDEEMKT GNVFDPKLED KGTKSEEKKG GFMLFGVMIQ  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2618127813100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012356m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393078.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLV4KGP00.0V4KGP0_EUTSA; Uncharacterized protein
STRINGXP_006393078.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-164RAV family protein