PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012199m
Common NameEUTSA_v10012199mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 466aa    MW: 51440.4 Da    PI: 4.2252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012199mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31299356259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK+vkg+++prsYY+Ct+++C+vkk+ver a++ k+v++tY g+H+h 
  Thhalv10012199m 299 DDGFRWRKYGQKVVKGNPNPRSYYKCTYNECQVKKHVERGADNAKLVVTTYDGKHEHA 356
                      8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-32283358IPR003657WRKY domain
SuperFamilySSF1182904.18E-26292358IPR003657WRKY domain
PROSITE profilePS5081131.95293358IPR003657WRKY domain
SMARTSM007748.4E-35298357IPR003657WRKY domain
PfamPF031065.3E-24299355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIDHDGNFME TISFWAPPSS PSPRTILEML NQTDNGINPI SEIFPQTNLS TYHHHQSEQR  60
SGLGERVAAR IGFNLPPLDA ENISPISAFF RNSTTVPSPV VEISPGFSPS ALLLSPDMFS  120
NSSQIIPSSP MANGETVESC GDNDETTMIF NNDLPHQPLH VDLPPEEGSD GIPTEESVNI  180
PSHESLADPI GAPLNASFEF EIVDQTDIIN RGGDPPLIIN INSESEDEDE DENEGEDEEY  240
NEDEDVDEEE DDDIVAELEV EPSSPKRRKF EVSNMIGATR TSKNERVIIQ MECEEDLPDD  300
GFRWRKYGQK VVKGNPNPRS YYKCTYNECQ VKKHVERGAD NAKLVVTTYD GKHEHAAPAA  360
RISHSGPRSR SGSSSVTQDS TNRTARLGRP PSSSQAMMRP LSSSSAPQID MTQFYMSGLS  420
RLPTLPVNQN TGSTYRNDEP NVIPDGSEVY KGIMHRLSLE FGLQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26289359878Probable WRKY transcription factor 4
2lex_A1e-26289359878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012199m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392618.10.0probable WRKY transcription factor 10
SwissprotQ9LG051e-157WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBLV4KFE80.0V4KFE8_EUTSA; Uncharacterized protein
STRINGXP_006392618.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.18e-77WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Li J,Nie X,Tan JL,Berger F
    Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
    [PMID:24003120]
  2. Fatihi A,Zbierzak AM,Dörmann P
    Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
    Plant Physiol., 2013. 163(2): p. 973-85
    [PMID:24014578]
  3. Liu P, et al.
    Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
    Mol Plant, 2014. 7(8): p. 1316-1328
    [PMID:24719465]
  4. Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
    SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
    New Phytol., 2016. 209(2): p. 636-49
    [PMID:26389843]
  5. Meng LS,Wang YB,Loake GJ,Jiang JH
    Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2016. 7: p. 1645
    [PMID:27857719]
  6. Meng LS,Wang YB,Loake GJ,Jiang JH
    Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2017. 8: p. 1073
    [PMID:28616014]