PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012161m
Common NameEUTSA_v10012161mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 321aa    MW: 36977.8 Da    PI: 9.2269
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012161mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.2e-102870250
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                     +ykGV +   +g W A+I+       +kr++lg+f +a eAa a++ a 
  Thhalv10012161m 28 KYKGVVQQQ-NGHWGAQIYTD-----HKRIWLGTFKSAAEAATAYDSAS 70
                     8****9888.8******9883.....4*******************985 PP
2B391.94.6e-29154248183
                      EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+k+ltpsdv+k++rlv+pkk+a +h            +g+  e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D+++F
  Thhalv10012161m 154 FQKKLTPSDVGKLNRLVIPKKYAVKHlpyisidqkdreEGEISEEVEVVFYDTGKRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKENDVILF 247
                      99******************************99888855556889************************************************ PP

                      E CS
               B3  83 k 83 
                      +
  Thhalv10012161m 248 Y 248
                      9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.80E-212785No hitNo description
PfamPF008478.5E-62869IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-132886IPR016177DNA-binding domain
PROSITE profilePS5103216.8452885IPR001471AP2/ERF domain
SMARTSM003807.3E-162891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-162885IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-31146249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-28152250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-22153248No hitNo description
SMARTSM010191.3E-20154261IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449154271IPR003340B3 DNA binding domain
PfamPF023622.1E-25154248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRPFKEEPDN ALVATATKKV ASCSSNAKYK GVVQQQNGHW GAQIYTDHKR IWLGTFKSAA  60
EAATAYDSAS ILLRSFDANS HRNFPCSDFT VHEPRFQKLH STEAVLNMIR DGSYQQKFKE  120
FLSQMATRIN TGGSKQSRGD KESDNKCFSC KQLFQKKLTP SDVGKLNRLV IPKKYAVKHL  180
PYISIDQKDR EEGEISEEVE VVFYDTGKRQ WKFRYCYWRS SQSFVFTRGW NGFVKEKNLK  240
ENDVILFYEC NLKTLDGQSK NFWMIDILFF SDDEKENESA HNSSVKELKT ENFISSKLED  300
EETKSEKKKG GFKLFGVMIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2615025110104DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012161m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393121.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-161RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLV4KKF60.0V4KKF6_EUTSA; Uncharacterized protein
STRINGXP_006393121.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-144RAV family protein