PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012158m
Common NameEUTSA_v10012158mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 324aa    MW: 37199.6 Da    PI: 5.0881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012158mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.39.8e-5661331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v
  Thhalv10012158m   6 LPPGFRFHPTDEELVAYYLDRKVNGQTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRSV 98 
                      79****************************.99**************95334455788************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
  Thhalv10012158m  99 ES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
                      *9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-643156IPR003441NAC domain
PROSITE profilePS5100559.9456156IPR003441NAC domain
PfamPF023653.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG QTIELEIIPE VDLYKCEPWD LPEKSFLPGN  60
DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRSVES KKMKMGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLAHTPSSS SSSFKESYAL CRVFKKNIQI PKRKEGQGEC EEEEMSTSVG  180
KDGEEEEKKW RKCDGNNVEE KMERESEEDD ESFKIASADT SSSELTQGIL LDEANSSSIF  240
ALHFSSSLLD DHLFSNYTTQ LPYHPNYPPL QLQDFPQLSM NEAEIMSINI SKQQDIQCRD  300
SMNGTLDEIF SFSKSPTIFP ASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-56115712166NO APICAL MERISTEM PROTEIN
1ut4_B3e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_A3e-56115712166NO APICAL MERISTEM PROTEIN
1ut7_B3e-56115712166NO APICAL MERISTEM PROTEIN
3swm_A3e-56115715169NAC domain-containing protein 19
3swm_B3e-56115715169NAC domain-containing protein 19
3swm_C3e-56115715169NAC domain-containing protein 19
3swm_D3e-56115715169NAC domain-containing protein 19
3swp_A3e-56115715169NAC domain-containing protein 19
3swp_B3e-56115715169NAC domain-containing protein 19
3swp_C3e-56115715169NAC domain-containing protein 19
3swp_D3e-56115715169NAC domain-containing protein 19
4dul_A3e-56115712166NAC domain-containing protein 19
4dul_B3e-56115712166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012158m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392555.10.0NAC domain-containing protein 86
TrEMBLV4MEY60.0V4MEY6_EUTSA; Uncharacterized protein
STRINGXP_006392555.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-152NAC domain containing protein 20