PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012152m
Common NameEUTSA_v10012152mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 355aa    MW: 40758 Da    PI: 8.2906
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012152mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-1055102255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGV +   +g W A+I+       +kr++lg+f +a eAa a++ a  kl+g
  Thhalv10012152m  55 RYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAATAYDSASIKLRG 102
                      69***9888.8******9993.....4************************998 PP
2B391.75.6e-29184280184
                      EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+k+ltpsdv+k++rlv+pkk+a ++            +g+ +e+++++++d+  r W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF
  Thhalv10012152m 184 FQKKLTPSDVGKLNRLVIPKKCAVKYlpflsvvqnereEGEIAEDVEVVFYDRGMRPWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKENDVIVF 277
                      99*******************************999986666799************************************************* PP

                      E.E CS
               B3  83 k.l 84 
                      + +
  Thhalv10012152m 278 YeY 280
                      932 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.96E-2454114No hitNo description
SuperFamilySSF541711.96E-1455114IPR016177DNA-binding domain
SMARTSM003801.7E-2055118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1755112IPR001471AP2/ERF domain
PROSITE profilePS5103217.85955112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.0E-32176282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-28182283IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-26183305No hitNo description
PROSITE profilePS5086312.069184292IPR003340B3 DNA binding domain
SMARTSM010198.5E-21184292IPR003340B3 DNA binding domain
PfamPF023624.1E-26184280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFLKSSVISM DNAKSESSSD SFLPLKKRMR PFEEEPDNAL IATATKKVAY SGNARYKGVV  60
QQQNGHWGAQ IYADHKRIWL GTFKSAAEAA TAYDSASIKL RGLDANAHRN FPWSDLTVHE  120
PEFQEEHTTE AVLNMIRDGS YQQKFRESLS KRSQMVAMIN TVGSEQSRRD QESDNKCFSC  180
KQLFQKKLTP SDVGKLNRLV IPKKCAVKYL PFLSVVQNER EEGEIAEDVE VVFYDRGMRP  240
WKFRYCYWRS SQSFVFTRGW NGFVKEKNLK ENDVIVFYEY DVSSNVKTLD GQSKKFWMID  300
IHIFSGDEEV NETVHNSSVK ELKTENFFSS KLEGEETKAE EKKGGFKLFG VMIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2318027710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012152m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393122.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-168RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLV4KSQ30.0V4KSQ3_EUTSA; Uncharacterized protein
STRINGXP_006393122.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-152RAV family protein