PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012100m
Common NameEUTSA_v10012100mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29806.2 Da    PI: 8.2085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012100mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.2e-181381249
                     HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     tfskRr g++KK +EL++LCdaeva+i+ s+++k++ +
  Thhalv10012100m  1 TFSKRRSGLFKKVSELCTLCDAEVAIIVHSPSQKVFSF 38
                     9*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-12141IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.605142IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-20158IPR002100Transcription factor, MADS-box
PfamPF003191.1E-18138IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-10419IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-101940IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
TFSKRRSGLF KKVSELCTLC DAEVAIIVHS PSQKVFSFGH PNVETVIDRF KNNNLPPPQQ  60
HGSMQLNEIR QNSNIRDLNN QLTQLMNQLE SEKKKNEELK KMRKNSQVPE RWWEKPIEEL  120
DLAQAFQFKT RLEELKKEVT SEASKMFQTA GPHQNFYVGS STNAPFGVND GNNFNLNSDQ  180
LNQKRMVNMN AVYNQNMFIP NRPLPFGNSF YGNAVERSVP EYNMNRLGYN QNQNLNLRGE  240
NISENEGYHG GDPPESGSGY *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012100m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400849.11e-155agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-89AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV4KU140.0V4KU14_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006393582.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-73AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]