PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012051m
Common NameEUTSA_v10012051mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 247aa    MW: 29057.8 Da    PI: 8.605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+++++++G g+W++ +r  g++Rt+k+c++rw++yl
  Thhalv10012051m 35 RGPWTVEEDMKLINYIALHGEGRWNSLPRSAGLNRTGKSCRLRWLNYL 82
                     89********************************************97 PP
2Myb_DNA-binding43.67e-1488131146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  + +E+ ++++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Thhalv10012051m  88 RGDISLQEQFIILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 131
                      5666889***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-223085IPR009057Homeodomain-like
PROSITE profilePS5129424.1093086IPR017930Myb domain
SuperFamilySSF466893.15E-3032129IPR009057Homeodomain-like
SMARTSM007171.9E-153484IPR001005SANT/Myb domain
PfamPF002495.3E-173582IPR001005SANT/Myb domain
CDDcd001671.14E-103782No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2186135IPR009057Homeodomain-like
SMARTSM007175.1E-1287135IPR001005SANT/Myb domain
PROSITE profilePS5129415.59487137IPR017930Myb domain
PfamPF002491.2E-1288131IPR001005SANT/Myb domain
CDDcd001675.31E-892131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MNINKTKFAN CKTLRQKEEV EEVKEEKKME MEIRRGPWTV EEDMKLINYI ALHGEGRWNS  60
LPRSAGLNRT GKSCRLRWLN YLRPDIRRGD ISLQEQFIIL ELHSRWGNRW SKIAQQLPGR  120
TDNEIKNYWR TRVQKHAKLL KCDVNSKQFK DTIKHLWMPR LVERIASTQN VEFTSNHYSP  180
ENSSVATAMS SSTSSEYMGS NFFDGDQMEY GTLDQMRNNC STWFNGEDAL ENLWSVDELN  240
NWLLQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252612918120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012051m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393501.10.0transcription factor MYB78
SwissprotQ10MB43e-84MYB2_ORYSJ; Transcription factor MYB2
TrEMBLV4KLH40.0V4KLH4_EUTSA; Uncharacterized protein
STRINGXP_006393501.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-125myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]