PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011762m
Common NameEUTSA_v10011762mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 223aa    MW: 23105.4 Da    PI: 7.0436
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011762mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1161.5e-362784461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     + l+cprC+s ntkfCyynny+l qPryfCk+CrryWt+GG+lr+vP+Ggg+r++ ++
  Thhalv10011762m 27 EPLSCPRCNSINTKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPIGGGTRRSSSK 84
                     6789*************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-222778IPR003851Zinc finger, Dof-type
PfamPF027019.7E-332883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.0812983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPSESTQTRP GRVQGSTAAY PPPNLAEPLS CPRCNSINTK FCYYNNYNLL QPRYFCKSCR  60
RYWTQGGTLR DVPIGGGTRR SSSKRNRSFS ASSATTASSS SSCSSSVVTT TTHESEPVVK  120
QGTATTEGSN VISGYGSFAS LLGGQGEGAF LALGNGLDYG FGFGYGLEEM SIGYLGGGGG  180
AGGEIPVVDG GDTWQIGGTE GKSGDSLIWP GLEISIQGND VK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011762m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889462e-77AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393549.11e-160dof zinc finger protein DOF1.6
SwissprotQ9SX977e-80DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLV4JZ671e-158V4JZ67_EUTSA; Uncharacterized protein
STRINGXP_006393549.11e-159(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.11e-59Dof family protein