PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011708m
Common NameEUTSA_v10011708mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 275aa    MW: 31328.6 Da    PI: 9.2599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011708mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.3e-5351311129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp+GfrFhPtdeel+++yL +kv + ++++ ++i ++d++k+ePwdLp+k++ +ekewyfF  rd+k++ g r+nrat++gyWk+tgkdke+++
  Thhalv10011708m   5 LPAGFRFHPTDEELITHYLSQKVLDVRFTA-KAIIDIDLNKSEPWDLPAKASMGEKEWYFFNLRDRKHPAGLRTNRATEAGYWKTTGKDKEIYR 97 
                      799************************999.8899*************999999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfykgrapkgek++Wvmheyrle
  Thhalv10011708m  98 -TGLLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                      .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-623152IPR003441NAC domain
PROSITE profilePS5100558.6485151IPR003441NAC domain
PfamPF023653.2E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEESLPAGFR FHPTDEELIT HYLSQKVLDV RFTAKAIIDI DLNKSEPWDL PAKASMGEKE  60
WYFFNLRDRK HPAGLRTNRA TEAGYWKTTG KDKEIYRTGL LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFKPTK EEWVVCRIFK KNVAAKRPQE QPKSSQPSFE PCKANSSMAN  180
NEFGDIELQS LSSTNFIDNN HFSHIQSQNG NYLADNISSN ACTGLVDMNL NMMTTTSTVP  240
SISSWLTSLL GQSLSPIDSL LLQAFQIRNS YRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55415716171NO APICAL MERISTEM PROTEIN
1ut4_B1e-55415716171NO APICAL MERISTEM PROTEIN
1ut7_A1e-55415716171NO APICAL MERISTEM PROTEIN
1ut7_B1e-55415716171NO APICAL MERISTEM PROTEIN
3swm_A2e-55415719174NAC domain-containing protein 19
3swm_B2e-55415719174NAC domain-containing protein 19
3swm_C2e-55415719174NAC domain-containing protein 19
3swm_D2e-55415719174NAC domain-containing protein 19
3swp_A2e-55415719174NAC domain-containing protein 19
3swp_B2e-55415719174NAC domain-containing protein 19
3swp_C2e-55415719174NAC domain-containing protein 19
3swp_D2e-55415719174NAC domain-containing protein 19
4dul_A1e-55415716171NAC domain-containing protein 19
4dul_B1e-55415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011708m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628782.11e-137PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ23e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4MH120.0V4MH12_EUTSA; Uncharacterized protein
STRINGXP_006393305.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-130NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]