PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011649m
Common NameEUTSA_v10011633mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 327aa    MW: 38079.6 Da    PI: 5.4106
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011649mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-071255340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+++ +k++ +fC +++ +lC+ C ++ H+       H++v
  Thhalv10011649m 12 QRDCELCLNKHAVWFCASDDAFLCHLCDESVHSAnqvatkHERV 55
                     678*****************************667788888766 PP
2CCT67.43.9e-23278321144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++
  Thhalv10011649m 278 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
                      9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7981057IPR000315B-box-type zinc finger
SMARTSM003364.0E-81057IPR000315B-box-type zinc finger
PfamPF006431.9E-61355IPR000315B-box-type zinc finger
CDDcd000219.28E-101557No hitNo description
PfamPF062031.0E-17278320IPR010402CCT domain
PROSITE profilePS5101715.944278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MISEHQEDVK AQRDCELCLN KHAVWFCASD DAFLCHLCDE SVHSANQVAT KHERVCLRTN  60
EISIRVLQGT TSKPVWHSGF RRKARTPRAR CEKKPQENID DERRREDPRV PEIGGQRMFF  120
IPETNDDDGD EDLTSLVPEF HGFIEMEFFL SNYDGSEETT RPFNFEDEID AMEDLCYNED  180
GEAKTDGDKA CPDQSLMSSK NNVIAITTKK EEMEDYESNA KQMNMLLRLN YENVIAAWDK  240
QESPRGAPIN ETEFNNISTF QLVPPGTEEK KMSSKSEREA RVWRYRDKRK NRLFEKKIRY  300
EVRKVNADKR PRMKGRFVRR SLASET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011649m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530060.0AK353006.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393308.10.0zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B31e-169COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLE4MWV90.0E4MWV9_EUTHA; mRNA, clone: RTFL01-13-C12
TrEMBLV4KHE50.0V4KHE5_EUTSA; Uncharacterized protein
TrEMBLV4KTA70.0V4KTA7_EUTSA; Uncharacterized protein
STRINGXP_006393308.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-154B-box type zinc finger protein with CCT domain