PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011605m
Common NameEUTSA_v10011605mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 360aa    MW: 40855.3 Da    PI: 7.2803
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011605mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32218273156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++WtpeLH+rFv+a+++LGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  Thhalv10011605m 218 KQRRCWTPELHRRFVDALQHLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 273
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.043215275IPR017930Myb domain
SuperFamilySSF466891.08E-17216276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27217276IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-27218273IPR006447Myb domain, plants
PfamPF002497.9E-9220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGSLGDELSL GSRRHSSMPI TICGFPRKAL KIMNFVVEKG CKLEEHLKKL EEEKRKIQSS  60
ELELPLCLQI LNDAISYLKE ENKRCSEMDT QPLLKDFISL NKPTREEHDE EEWRHGDGLL  120
LKREELVKEK EFQLWRDKDH TKIKNKLEIE RSEEKSSNGL SSMLLIPRTI PKVETGLGLG  180
LTTSTMVNER RKEMASCGFT SSSTPQPPSF LQKQALRKQR RCWTPELHRR FVDALQHLGG  240
PGVATPKQIR EHMQEEGLTN DEVKSHLQKY RLHMRKPNSN PEKQSVVVLG FKLWNSSQEE  300
EETGEGGGDS SKRSNSKSDS PQGPLQLPCT TTTTGGDSSM EDAEDAKSES FQMERVRSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011605m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216311e-141AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393245.10.0transcription factor HHO6
SwissprotQ9FX841e-143HHO6_ARATH; Transcription factor HHO6
TrEMBLV4MGV80.0V4MGV8_EUTSA; Uncharacterized protein
STRINGXP_006393245.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-107G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]