PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10011603m

Common Name

EUTSA_v10011606mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 360aa MW: 40005.2 Da PI: 5.1891

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011603m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	124	173	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g Thhalv10011603m 124 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 173 69*****.******965...3***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.4E-38	124	187	IPR001471	AP2/ERF domain
CDD	cd00018	9.95E-18	124	182	No hit	No description
PROSITE profile	PS51032	24.395	124	181	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-22	124	182	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.0E-32	124	183	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-11	125	136	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-13	125	173	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-11	147	163	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070483	Biological Process	detection of hypoxia
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NVKGLKRSSK KRSNFFDLDD EFEADFQGFK 60 DDSSIDCDDD FDVDDVFADV KPFVFTASPK PVVSSAASDS AFGKKVADFK GQAEKSSKRK 120 RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF 180 PEENPTVSQK RPAKVSSQKP VAKPNSNPSP ALVQNFDNSF DNMCFVEEKH QVNSNNQFGL 240 KNTIDVGGNG YHQYFSSDQG SNSFDCSEFG WSGQAPITPE ISSAFINNNN NNNSAVFVEE 300 ANPAKKLKSM DFETPYNNTE WESSLDFLNG DGVATQDNGL NPMDLWSIDE IDSMIGGVF*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NVKGLKRSSK KRSNFFDLDD EFEADFQGFK  60
DDSSIDCDDD FDVDDVFADV KPFVFTASPK PVVSSAASDS AFGKKVADFK GQAEKSSKRK  120
RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF  180
PEENPTVSQK RPAKVSSQKP VAKPNSNPSP ALVQNFDNSF DNMCFVEEKH QVNSNNQFGL  240
KNTIDVGGNG YHQYFSSDQG SNSFDCSEFG WSGQAPITPE ISSAFINNNN NNNSAVFVEE  300
ANPAKKLKSM DFETPYNNTE WESSLDFLNG DGVATQDNGL NPMDLWSIDE IDSMIGGVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-23	124	181	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	41	KKNVKGLKRSSKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269\|PubMed:22020282, ECO:0000269\|PubMed:22530619}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00204	DAP	Transfer from AT1G53910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011603m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269\|PubMed:22020282}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353211	0.0	AK353211.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-M23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392736.1	0.0	ethylene-responsive transcription factor RAP2-12
Refseq	XP_006392737.1	0.0	ethylene-responsive transcription factor RAP2-12
Swissprot	Q9SSA8	0.0	RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBL	E4MXG4	0.0	E4MXG4_EUTHA; mRNA, clone: RTFL01-22-M23
TrEMBL	V4KJG3	0.0	V4KJG3_EUTSA; Uncharacterized protein
STRING	XP_006392736.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.2	1e-146	related to AP2 12

Link Out ? help Back to Top
Phytozome	Thhalv10011603m
Entrez Gene	18010454

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kosmacz M, et al. The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration. Plant Cell Environ., 2015. 38(6): p. 1094-103 [PMID:25438831] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Gonzali S, et al. Universal stress protein HRU1 mediates ROS homeostasis under anoxia. Nat Plants, 2015. 1: p. 15151 [PMID:27251529] Paul MV, et al. Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia. Plant Physiol., 2016. 172(1): p. 141-53 [PMID:27372243] Shahzad Z, et al. A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics. Cell, 2016. 167(1): p. 87-98.e14 [PMID:27641502] Yao Y, et al. ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis. New Phytol., 2017. 213(4): p. 1667-1681 [PMID:28164334] Giuntoli B,Licausi F,van Veen H,Perata P Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants. Front Plant Sci, 2017. 8: p. 591 [PMID:28487707] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Giuntoli B, et al. Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana. Plant Cell Environ., 2017. 40(10): p. 2333-2346 [PMID:28741696]