PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011535m | ||||||||
Common Name | EUTSA_v10011534mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 408aa MW: 44584.9 Da PI: 7.0453 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.1 | 6.4e-34 | 54 | 168 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa 70 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+ +ak +i++l+++ s Thhalv10011535m 54 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIMKAKSSIDDLAKLppwnpadtirqaaanakprrpktliS---- 143 79**************************************************************76666665555444444444444331.... PP TCP 71 seceaesssssasnsssg.........kaaksaakskksqksa 104 + + ++ +++++ ++++ Thhalv10011535m 144 -----------------PppetgirggS-VSTREETEHHRHHD 168 .................03333333321.11111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-31 | 54 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.606 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGNEEPNHHH LVDSQSPPLL AMTHQSLFSA VAATENGGCG EIVEVQGGHI VRSTGRKDRH 60 SKVCTAKGPR DRRVRLSAPT AIQFYDVQDR LGFDRPSKAV DWLIMKAKSS IDDLAKLPPW 120 NPADTIRQAA ANAKPRRPKT LISPPPETGI RGGSVSTREE TEHHRHHDSS FLPASMDSDS 180 IADTIKSFFP VVSTESPPPQ NYHHQPPSEF PSRATNNTQN QDLRLSLQSF QNGPPFANQT 240 EHVEFSGQSN PLGFDSSTAS WVQSQQNHNQ SPEFGRVVTW NNGGAADSAA IGGGRGGFVF 300 ASPATTTSFP FQPDYGQSQV FSQRGPLQSI NTPMIRAWFD PHHHHQYTNT DHHPYQIPPA 360 IHQSAIPGIA LGSSGEFSGF CIPARFQGEQ EEHRDNKPSS ASSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-19 | 61 | 114 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-19 | 61 | 114 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011535m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC008007 | 2e-82 | AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence. | |||
GenBank | AY099678 | 2e-82 | AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | BT000266 | 2e-82 | BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds. | |||
GenBank | CP002684 | 2e-82 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392814.1 | 0.0 | transcription factor TCP3 | ||||
Refseq | XP_006392815.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-170 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | V4JXC2 | 0.0 | V4JXC2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392814.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-163 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011535m |
Entrez Gene | 18010920 |
Publications ? help Back to Top | |||
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