PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011238m | ||||||||
Common Name | EUTSA_v10011238mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 91839.3 Da PI: 6.4169 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Thhalv10011238m 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP | |||||||
2 | START | 168.4 | 4.7e-53 | 161 | 369 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l Thhalv10011238m 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIEL 253 7899******************************************************.7777777777****************9999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+ Thhalv10011238m 254 LYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRP 347 *********************************************999999******************************************* PP HHHHHHHHHHHHHHHHTXXXXX CS START 184 lvksglaegaktwvatlqrqce 205 l++s + ++kt++a+l+++++ Thhalv10011238m 348 LYESPKVLAQKTTMAALRQLKQ 369 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.2E-15 | 14 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-17 | 16 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.31E-16 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 5.8E-16 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.127 | 20 | 76 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.05E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 25.118 | 151 | 379 | IPR002913 | START domain |
CDD | cd08875 | 4.84E-73 | 155 | 371 | No hit | No description |
SuperFamily | SSF55961 | 9.89E-36 | 160 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.1E-20 | 160 | 346 | IPR023393 | START-like domain |
SMART | SM00234 | 1.3E-36 | 160 | 370 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-50 | 161 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 4.9E-53 | 694 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVAQL VHENSYFRQH 120 TPNPSLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFL SKATGTAVEW 180 VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM 240 NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM 300 PLVQHFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT 360 MAALRQLKQI AQEVSQTNSS VNGWGRRPAA LRALSQRLSR GFNEAVNGFT DEGWSVIGDN 420 MDDVTITVNS SPDKLMGSNL TFSNGFAPVN SVVLCAKASM LLQNVPPAIL LRFLREHRSE 480 WADNNIDAYL AAAVKVGPCS ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI 540 VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN 600 RTLDLASALE IGSAGTTKAS SDQSGNTTCA RSVMTIAFEF GIESHMQEHV ASMARQYVRG 660 IISSVQRVAL ALSPSHISSQ VGLRTPLGTP EAQTLARWIC QSYRCYMGVE LLKSNSEGNE 720 SILKNLWHHT DAIICCSMKA MPVFTFANQA GLDMLETTLV ALQDISLEKI FDDNGRKTLC 780 SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFV FINWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011238m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ439449 | 0.0 | AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene). | |||
GenBank | AY060556 | 0.0 | AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392953.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | V4KGD2 | 0.0 | V4KGD2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392953.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011238m |
Entrez Gene | 18010414 |
Publications ? help Back to Top | |||
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