PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011051m
Common NameEUTSA_v10011051mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 269aa    MW: 31375.6 Da    PI: 5.9458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34291192101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgFkk++ e+         weF+++ F  g+++ll+
  Thhalv10011051m  29 FLIKTFEIVEDPNTDHIVSWNRGGTSFVVWDLHSFSTVLLPRHFKHSNFSSFIRQLNTYGFKKIEAER---------WEFANEGFLVGQRQLLK 113
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  Thhalv10011051m 114 SIKRRA 119
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5425118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-3625118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3325118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2929118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNPFLFQEFD PPPPPRPIEG LNEIGPPPFL IKTFEIVEDP NTDHIVSWNR GGTSFVVWDL  60
HSFSTVLLPR HFKHSNFSSF IRQLNTYGFK KIEAERWEFA NEGFLVGQRQ LLKSIKRRAT  120
FSSSSPSIHD PCIELRREKQ LLLMELVSLR QQHQTTRNYI KAMEQRIEGA ERKQRQMMSF  180
LARAMQSPTF LHQLLKQRDK RLKELEDESA EREKGSSMSE LEVLALEMQG YGKQRNMKEE  240
DDMVIERELD DGFWEELLSD ESLASTSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-232012017131Heat shock factor protein 1
5d5v_B4e-232012017131Heat shock factor protein 1
5d5v_D4e-232012017131Heat shock factor protein 1
5hdg_A4e-23271208112Heat shock factor protein 1
5hdn_A4e-23271208112Heat shock factor protein 1
5hdn_B4e-23271208112Heat shock factor protein 1
5hdn_C4e-23271208112Heat shock factor protein 1
5hdn_D4e-23271208112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011051m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403869.10.0heat stress transcription factor A-7a
SwissprotQ9SV121e-154HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLV4LS520.0V4LS52_EUTSA; Uncharacterized protein
STRINGXP_006403869.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-158heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]