PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10010666m | ||||||||
Common Name | EUTSA_v10010666mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26270.6 Da PI: 7.2883 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.5 | 1.5e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q Thhalv10010666m 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQ 95 6********************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Thhalv10010666m 96 AAVETVLR 103 **999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.59 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPESQC 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRGGGG 120 FGGFPSPTSD EASEICTEML NDSGDRNIYH HSRFSSSRSR STASPPKRKR LASEQQQQQL 180 NHSSELDLSL IPTFPIKEEM GRPETPSMYS AESVTTASFD NSAGERFVRG GGETTKLLNL 240 FA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10010666m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085761 | 1e-133 | AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404087.1 | 1e-180 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 1e-136 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | V4L5E6 | 1e-178 | V4L5E6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404087.1 | 1e-179 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-120 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10010666m |
Entrez Gene | 18021285 |