PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10010657m | ||||||||
Common Name | EUTSA_v10010657mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29231 Da PI: 8.8546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l v ++G g+W+tI+ g+ R +k+c++rw +yl Thhalv10010657m 20 KGLWSPEEDEKLRSHVLKYGHGCWSTIPIQAGLQRNGKSCRLRWVNYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g +T+eE+ l+ ++ lG++ W+ I+++++ gRt++++k++w++yl Thhalv10010657m 73 KGLFTKEEETTLLSLHSILGNK-WSQISKYLP-GRTDNEIKNYWHSYL 118 5779******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.501 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-30 | 19 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.41E-10 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.913 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-16 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 73 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-11 | 76 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVFKSEKSNP KLKFKGKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPIQA GLQRNGKSCR 60 LRWVNYLRPG LKKGLFTKEE ETTLLSLHSI LGNKWSQISK YLPGRTDNEI KNYWHSYLKK 120 SVTPTQHETT RPQTHSITNS LKAMESTTGR SSSLINVGES LNARVPSFSP SLVFSEWLDH 180 SLVLDQSPQK CSYVQDLIVP EEKGLRFYEN NNALDDFIPN SDFLLENEIF ETEFCSSFSN 240 NFLFDGLTNE QRSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10010657m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404203.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 6e-59 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | V4NHJ3 | 0.0 | V4NHJ3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404203.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48920.1 | 1e-136 | myb domain protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10010657m |
Entrez Gene | 18021522 |
Publications ? help Back to Top | |||
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