PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010562m
Common NameEUTSA_v10010562mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 313aa    MW: 33971.9 Da    PI: 10.1888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010562mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.5e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
  Thhalv10010562m  5 KQKWTPEEETALKSGVLKHGTGKWRTILSDPEyssvlKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.641161IPR017930Myb domain
SuperFamilySSF466892.92E-15259IPR009057Homeodomain-like
SMARTSM007171.0E-6459IPR001005SANT/Myb domain
PfamPF002496.8E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14556IPR009057Homeodomain-like
CDDcd116601.11E-17656No hitNo description
SMARTSM005269.2E-9120187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150416.871124192IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-11124203IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-7126201IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-4127184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGAPKQKWTP EEETALKSGV LKHGTGKWRT ILSDPEYSSV LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKRTPSSGP KQDDDNTTAL TIVALANGDD GGQQINPTSP PAVSCEPPRA  120
FKGPFTSVDK IILEAITKLE KPLGPDGKSI LLYIEENYKM QPDMKRLVTS RLKYLTNVGT  180
LVKINHKYRI SSNYVAAGAK QKSPQLMLEA NKENSPKPEE NGVKNLAKPQ VDGEVLMIKG  240
MTAQEAAAAA ARAVAEAEFA IAKAEEAARE AEQAEAEAEA AFIFAKAAMK AFKFRMRRQT  300
RSSVNSAACN VS*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010562m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013637.10.0telomere repeat-binding factor 3 isoform X1
RefseqXP_024013638.10.0telomere repeat-binding factor 3 isoform X2
SwissprotQ9M2X31e-148TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLV4M0570.0V4M057_EUTSA; Uncharacterized protein
STRINGXP_006404095.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-140telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]