PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010340m
Common NameEUTSA_v10010340mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 471aa    MW: 52606.4 Da    PI: 6.9299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010340mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-50131411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+G+rF+Ptd+elv +yL++k++g+++++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgkd+++
  Thhalv10010340m  13 LPVGLRFRPTDQELVRFYLRRKINGHDNDV-KAIREIDICKWEPWDLPdfSVIKTKDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKI 105
                      799************************999.89***************6448889999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s k++ +g+k+tLvf++grapkg++t+W++heyr+
  Thhalv10010340m 106 RSDKDNIIGVKRTLVFHSGRAPKGTRTNWIIHEYRA 141
                      **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-569164IPR003441NAC domain
PROSITE profilePS5100554.11113164IPR003441NAC domain
PfamPF023652.2E-2314140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNPNIEVLSL DSLPVGLRFR PTDQELVRFY LRRKINGHDN DVKAIREIDI CKWEPWDLPD  60
FSVIKTKDSE WLFFCPLDRK YPNGSRQNRA TIAGYWKATG KDRKIRSDKD NIIGVKRTLV  120
FHSGRAPKGT RTNWIIHEYR ATEKDLSGTN PGQSPFVICK LFKKQDLSLA EEDSKLDEAE  180
PAVSSPAVAA SSPDDTKSEV SMVAKTEDVK RCDIAESSLV ISGDPHSGAC DEATTAELGH  240
LDWLSFPELE SVNYKLFSPL HSQVQSELGS SFIAIQPGSS DFSGNHNNNS FQIQTQYGTN  300
EVDTYISDFL DSILDLPDEV PEKQKFVLQS GPDQIAPAYQ QRPAGDMSND VSRTGITLKT  360
RREQQSSGCT TDYIMHGNAS RRLRLQSKLN DVNSKDTELQ IIKREVEDTV GETMKKGKPM  420
RSKNRTGFLF KKMVSVKCSY GGLLRAAIVA VLFLMSVCSL TSDFRASVMI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46816512166NO APICAL MERISTEM PROTEIN
1ut4_B3e-46816512166NO APICAL MERISTEM PROTEIN
1ut7_A3e-46816512166NO APICAL MERISTEM PROTEIN
1ut7_B3e-46816512166NO APICAL MERISTEM PROTEIN
4dul_A3e-46816512166NAC domain-containing protein 19
4dul_B3e-46816512166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010340m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404132.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLV4L5I20.0V4L5I2_EUTSA; Uncharacterized protein
STRINGXP_006404132.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]