PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010019m
Common NameEUTSA_v10010019mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 341aa    MW: 38216.6 Da    PI: 9.5478
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010019mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.9e-1355103155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a  +++g
  Thhalv10010019m  55 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 103
                      89****9888.8*********3.....5**********99***********9998 PP
2B31031.6e-32184287199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+ tpsdv+k++rlv+pk++ae+h     ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ ++
  Thhalv10010019m 184 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSDGQD 277
                      89****************************9888889***************************************************987799 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      ++l++++ ++
  Thhalv10010019m 278 QQLYIGWKSR 287
                      9999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-855103IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1755112IPR016177DNA-binding domain
CDDcd000185.80E-2655113No hitNo description
SMARTSM003801.0E-2756117IPR001471AP2/ERF domain
PROSITE profilePS5103220.19256111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2056112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-42176290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-33179288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-28182275No hitNo description
PfamPF023622.4E-29184287IPR003340B3 DNA binding domain
PROSITE profilePS5086314.438184288IPR003340B3 DNA binding domain
SMARTSM010194.5E-26184288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEVSSVDEST TSTGSICETP AKKSSVNLYR MGSGSSVVLD SENGVEAESR KLPSSKYKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAVHR FRGRDAVTNF KDARLDDGEI  120
DFLNSHSKSE IVDMLRKHTY KEELEQSKRR RNGNGNTVRT SMTAALDNDD GVSTMEFRSA  180
EPLFEKAVTP SDVGKLNRLV IPKHHAEKHF PLPSSNVSVK GVLLNFEDVT GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK NLRAGDVVSF SRSDGQDQQL YIGWKSRSGS DSETGRVLRL  300
FGVNISPESS RNDVVGSKRV NDTEMLSLVC SKKQRIFHAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-7418029110121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010019m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530750.0AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417140.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLV4L6Y30.0V4L6Y3_EUTSA; Uncharacterized protein
STRINGXP_006417140.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]